Gene : AT5G08565 A. thaliana TAIR10
Defline:  (1 of 2) K15171 - transcription elongation factor SPT4 (SUPT4H1, SPT4) Genomic Order:  804
Name:  ? AT5G08565 Secondary Identifier:  ? PAC:19669269
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G08565 0.5kb upstream 0.5kb upstream 2050 true Chr5: 2775397-2777446 Arabidopsis thaliana
AT5G08565 0.5kb upstream 0.5kb upstream 500 false Chr5: 2775397-2775896 Arabidopsis thaliana
AT5G08565 0.5kb downstream 0.5kb downstream 2050 true Chr5: 2775897-2777946 Arabidopsis thaliana
AT5G08565 0.5kb downstream 0.5kb downstream 500 false Chr5: 2777447-2777946 Arabidopsis thaliana
AT5G08565 1.0kb upstream 1.0kb upstream 2550 true Chr5: 2774897-2777446 Arabidopsis thaliana
AT5G08565 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2774897-2775896 Arabidopsis thaliana
AT5G08565 1.0kb downstream 1.0kb downstream 2550 true Chr5: 2775897-2778446 Arabidopsis thaliana
AT5G08565 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2777447-2778446 Arabidopsis thaliana
AT5G08565 2.0kb upstream 2.0kb upstream 3550 true Chr5: 2773897-2777446 Arabidopsis thaliana
AT5G08565 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2773897-2775896 Arabidopsis thaliana
AT5G08565 2.0kb downstream 2.0kb downstream 3550 true Chr5: 2775897-2779446 Arabidopsis thaliana
AT5G08565 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2777447-2779446 Arabidopsis thaliana
AT5G08565 5.0kb upstream 5.0kb upstream 6550 true Chr5: 2770897-2777446 Arabidopsis thaliana
AT5G08565 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2770897-2775896 Arabidopsis thaliana
AT5G08565 5.0kb downstream 5.0kb downstream 6550 true Chr5: 2775897-2782446 Arabidopsis thaliana
AT5G08565 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2777447-2782446 Arabidopsis thaliana
AT5G08565 10.0kb upstream 10.0kb upstream 11550 true Chr5: 2765897-2777446 Arabidopsis thaliana
AT5G08565 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2765897-2775896 Arabidopsis thaliana
AT5G08565 10.0kb downstream 10.0kb downstream 11550 true Chr5: 2775897-2787446 Arabidopsis thaliana
AT5G08565 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2777447-2787446 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124242443 5268 Malvidae View MSA
122343155 5261 Brassicaceae View MSA
123838022 5264 Brassicales-Malvales View MSA
124339138 5266 SBM View MSA
124065394 5270 Rosid View MSA
123740657 5271 Pentapetalae View MSA
122786663 5272 Eudicot View MSA
122042342 5273 Angiosperm View MSA
121345840 5274 Embryophyte View MSA
123426410 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.883        
cufflinks 1.054        
cufflinks 0.722       Low
cufflinks 0.993        
cufflinks 0.951        
cufflinks 0.996        

0 Strain