Gene : AGAL1 A. thaliana TAIR10
Primary Identifier:  ? AT5G08380 Defline:  (1 of 1) PTHR11452//PTHR11452:SF18 - ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE // ALPHA-GALACTOSIDASE 1
Genomic Order:  781 Name:  ? AT5G08380
Secondary Identifier:  ? PAC:19672483
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY0-1301 Arabidopsis thaliana pathologic  
Athaliana PWY-6527 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G08380 0.5kb upstream 0.5kb upstream 3548 true Chr5: 2694677-2698224 Arabidopsis thaliana
AT5G08380 0.5kb upstream 0.5kb upstream 500 false Chr5: 2697725-2698224 Arabidopsis thaliana
AT5G08380 0.5kb downstream 0.5kb downstream 3548 true Chr5: 2694177-2697724 Arabidopsis thaliana
AT5G08380 0.5kb downstream 0.5kb downstream 500 false Chr5: 2694177-2694676 Arabidopsis thaliana
AT5G08380 1.0kb upstream 1.0kb upstream 4048 true Chr5: 2694677-2698724 Arabidopsis thaliana
AT5G08380 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2697725-2698724 Arabidopsis thaliana
AT5G08380 1.0kb downstream 1.0kb downstream 4048 true Chr5: 2693677-2697724 Arabidopsis thaliana
AT5G08380 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2693677-2694676 Arabidopsis thaliana
AT5G08380 2.0kb upstream 2.0kb upstream 5048 true Chr5: 2694677-2699724 Arabidopsis thaliana
AT5G08380 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2697725-2699724 Arabidopsis thaliana
AT5G08380 2.0kb downstream 2.0kb downstream 5048 true Chr5: 2692677-2697724 Arabidopsis thaliana
AT5G08380 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2692677-2694676 Arabidopsis thaliana
AT5G08380 5.0kb upstream 5.0kb upstream 8048 true Chr5: 2694677-2702724 Arabidopsis thaliana
AT5G08380 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2697725-2702724 Arabidopsis thaliana
AT5G08380 5.0kb downstream 5.0kb downstream 8048 true Chr5: 2689677-2697724 Arabidopsis thaliana
AT5G08380 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2689677-2694676 Arabidopsis thaliana
AT5G08380 10.0kb upstream 10.0kb upstream 13048 true Chr5: 2694677-2707724 Arabidopsis thaliana
AT5G08380 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2697725-2707724 Arabidopsis thaliana
AT5G08380 10.0kb downstream 10.0kb downstream 13048 true Chr5: 2684677-2697724 Arabidopsis thaliana
AT5G08380 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2684677-2694676 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377510 5261 Brassicaceae View MSA
123835368 5264 Brassicales-Malvales View MSA
124322036 5266 SBM View MSA
124237729 5268 Malvidae View MSA
124069485 5270 Rosid View MSA
123749303 5271 Pentapetalae View MSA
122796981 5272 Eudicot View MSA
122048958 5273 Angiosperm View MSA
121347217 5274 Embryophyte View MSA
123428348 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.181       High
cufflinks 9.228        
cufflinks 17.777        
cufflinks 9.629        
cufflinks 21.976        
cufflinks 9.591        

0 Strain