Gene : AT5G08200 A. thaliana TAIR10
Defline:  (1 of 2) PTHR20932//PTHR20932:SF8 - LOC443603 PROTEIN-RELATED // PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN Genomic Order:  761
Name:  ? AT5G08200 Secondary Identifier:  ? PAC:19665830
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G08200 0.5kb upstream 0.5kb upstream 3289 true Chr5: 2637536-2640824 Arabidopsis thaliana
AT5G08200 0.5kb upstream 0.5kb upstream 500 false Chr5: 2637536-2638035 Arabidopsis thaliana
AT5G08200 0.5kb downstream 0.5kb downstream 3289 true Chr5: 2638036-2641324 Arabidopsis thaliana
AT5G08200 0.5kb downstream 0.5kb downstream 500 false Chr5: 2640825-2641324 Arabidopsis thaliana
AT5G08200 1.0kb upstream 1.0kb upstream 3789 true Chr5: 2637036-2640824 Arabidopsis thaliana
AT5G08200 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2637036-2638035 Arabidopsis thaliana
AT5G08200 1.0kb downstream 1.0kb downstream 3789 true Chr5: 2638036-2641824 Arabidopsis thaliana
AT5G08200 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2640825-2641824 Arabidopsis thaliana
AT5G08200 2.0kb upstream 2.0kb upstream 4789 true Chr5: 2636036-2640824 Arabidopsis thaliana
AT5G08200 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2636036-2638035 Arabidopsis thaliana
AT5G08200 2.0kb downstream 2.0kb downstream 4789 true Chr5: 2638036-2642824 Arabidopsis thaliana
AT5G08200 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2640825-2642824 Arabidopsis thaliana
AT5G08200 5.0kb upstream 5.0kb upstream 7789 true Chr5: 2633036-2640824 Arabidopsis thaliana
AT5G08200 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2633036-2638035 Arabidopsis thaliana
AT5G08200 5.0kb downstream 5.0kb downstream 7789 true Chr5: 2638036-2645824 Arabidopsis thaliana
AT5G08200 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2640825-2645824 Arabidopsis thaliana
AT5G08200 10.0kb upstream 10.0kb upstream 12789 true Chr5: 2628036-2640824 Arabidopsis thaliana
AT5G08200 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2628036-2638035 Arabidopsis thaliana
AT5G08200 10.0kb downstream 10.0kb downstream 12789 true Chr5: 2638036-2650824 Arabidopsis thaliana
AT5G08200 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2640825-2650824 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040928 5273 Angiosperm View MSA
122369053 5261 Brassicaceae View MSA
123840359 5264 Brassicales-Malvales View MSA
124346136 5266 SBM View MSA
124254251 5268 Malvidae View MSA
124070010 5270 Rosid View MSA
123744886 5271 Pentapetalae View MSA
122793061 5272 Eudicot View MSA
121350889 5274 Embryophyte View MSA
123426344 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.77        
cufflinks 11.308        
cufflinks 5.66       Low
cufflinks 12.697       High
cufflinks 5.8       Low
cufflinks 11.998        

0 Strain