Gene : AT5G08300 A. thaliana TAIR10
Defline:  (1 of 2) K01899 - succinyl-CoA synthetase alpha subunit (LSC1) Genomic Order:  770
Name:  ? AT5G08300 Secondary Identifier:  ? PAC:19672719
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G08300 0.5kb upstream 0.5kb upstream 3012 true Chr5: 2666912-2669923 Arabidopsis thaliana
AT5G08300 0.5kb upstream 0.5kb upstream 500 false Chr5: 2666912-2667411 Arabidopsis thaliana
AT5G08300 0.5kb downstream 0.5kb downstream 3012 true Chr5: 2667412-2670423 Arabidopsis thaliana
AT5G08300 0.5kb downstream 0.5kb downstream 500 false Chr5: 2669924-2670423 Arabidopsis thaliana
AT5G08300 1.0kb upstream 1.0kb upstream 3512 true Chr5: 2666412-2669923 Arabidopsis thaliana
AT5G08300 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2666412-2667411 Arabidopsis thaliana
AT5G08300 1.0kb downstream 1.0kb downstream 3512 true Chr5: 2667412-2670923 Arabidopsis thaliana
AT5G08300 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2669924-2670923 Arabidopsis thaliana
AT5G08300 2.0kb upstream 2.0kb upstream 4512 true Chr5: 2665412-2669923 Arabidopsis thaliana
AT5G08300 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2665412-2667411 Arabidopsis thaliana
AT5G08300 2.0kb downstream 2.0kb downstream 4512 true Chr5: 2667412-2671923 Arabidopsis thaliana
AT5G08300 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2669924-2671923 Arabidopsis thaliana
AT5G08300 5.0kb upstream 5.0kb upstream 7512 true Chr5: 2662412-2669923 Arabidopsis thaliana
AT5G08300 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2662412-2667411 Arabidopsis thaliana
AT5G08300 5.0kb downstream 5.0kb downstream 7512 true Chr5: 2667412-2674923 Arabidopsis thaliana
AT5G08300 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2669924-2674923 Arabidopsis thaliana
AT5G08300 10.0kb upstream 10.0kb upstream 12512 true Chr5: 2657412-2669923 Arabidopsis thaliana
AT5G08300 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2657412-2667411 Arabidopsis thaliana
AT5G08300 10.0kb downstream 10.0kb downstream 12512 true Chr5: 2667412-2679923 Arabidopsis thaliana
AT5G08300 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2669924-2679923 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366711 5261 Brassicaceae View MSA
123837758 5264 Brassicales-Malvales View MSA
124342253 5266 SBM View MSA
124250817 5268 Malvidae View MSA
124071271 5270 Rosid View MSA
123744798 5271 Pentapetalae View MSA
122787057 5272 Eudicot View MSA
122044805 5273 Angiosperm View MSA
121349115 5274 Embryophyte View MSA
123424705 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.584     High High
cufflinks 29.703     High Low
cufflinks 33.523     High  
cufflinks 36.31     High  
cufflinks 34.792     High  
cufflinks 39.054     High  

0 Strain