Gene : AT5G08180 A. thaliana TAIR10
Defline:  (1 of 1) K11129 - H/ACA ribonucleoprotein complex subunit 2 (NHP2, NOLA2) Genomic Order:  758
Name:  ? AT5G08180 Secondary Identifier:  ? PAC:19672787
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G08180 0.5kb upstream 0.5kb upstream 2835 true Chr5: 2631516-2634350 Arabidopsis thaliana
AT5G08180 0.5kb upstream 0.5kb upstream 500 false Chr5: 2633851-2634350 Arabidopsis thaliana
AT5G08180 0.5kb downstream 0.5kb downstream 2835 true Chr5: 2631016-2633850 Arabidopsis thaliana
AT5G08180 0.5kb downstream 0.5kb downstream 500 false Chr5: 2631016-2631515 Arabidopsis thaliana
AT5G08180 1.0kb upstream 1.0kb upstream 3335 true Chr5: 2631516-2634850 Arabidopsis thaliana
AT5G08180 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2633851-2634850 Arabidopsis thaliana
AT5G08180 1.0kb downstream 1.0kb downstream 3335 true Chr5: 2630516-2633850 Arabidopsis thaliana
AT5G08180 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2630516-2631515 Arabidopsis thaliana
AT5G08180 2.0kb upstream 2.0kb upstream 4335 true Chr5: 2631516-2635850 Arabidopsis thaliana
AT5G08180 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2633851-2635850 Arabidopsis thaliana
AT5G08180 2.0kb downstream 2.0kb downstream 4335 true Chr5: 2629516-2633850 Arabidopsis thaliana
AT5G08180 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2629516-2631515 Arabidopsis thaliana
AT5G08180 5.0kb upstream 5.0kb upstream 7335 true Chr5: 2631516-2638850 Arabidopsis thaliana
AT5G08180 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2633851-2638850 Arabidopsis thaliana
AT5G08180 5.0kb downstream 5.0kb downstream 7335 true Chr5: 2626516-2633850 Arabidopsis thaliana
AT5G08180 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2626516-2631515 Arabidopsis thaliana
AT5G08180 10.0kb upstream 10.0kb upstream 12335 true Chr5: 2631516-2643850 Arabidopsis thaliana
AT5G08180 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2633851-2643850 Arabidopsis thaliana
AT5G08180 10.0kb downstream 10.0kb downstream 12335 true Chr5: 2621516-2633850 Arabidopsis thaliana
AT5G08180 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2621516-2631515 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040888 5273 Angiosperm View MSA
122378853 5261 Brassicaceae View MSA
123838682 5264 Brassicales-Malvales View MSA
124346518 5266 SBM View MSA
124237021 5268 Malvidae View MSA
124066793 5270 Rosid View MSA
123737256 5271 Pentapetalae View MSA
122793138 5272 Eudicot View MSA
121345742 5274 Embryophyte View MSA
123425979 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.792        
cufflinks 14.684        
cufflinks 6.911        
cufflinks 14.349        
cufflinks 5.479       Low
cufflinks 17.925       High

0 Strain