Gene : AT5G07820 A. thaliana TAIR10
Defline:  (1 of 4) PTHR33349:SF1 - CALMODULIN-BINDING PROTEIN-LIKE PROTEIN Genomic Order:  719
Name:  ? AT5G07820 Secondary Identifier:  ? PAC:19666558
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G07820 0.5kb upstream 0.5kb upstream 2961 true Chr5: 2498749-2501709 Arabidopsis thaliana
AT5G07820 0.5kb upstream 0.5kb upstream 500 false Chr5: 2501210-2501709 Arabidopsis thaliana
AT5G07820 0.5kb downstream 0.5kb downstream 2961 true Chr5: 2498249-2501209 Arabidopsis thaliana
AT5G07820 0.5kb downstream 0.5kb downstream 500 false Chr5: 2498249-2498748 Arabidopsis thaliana
AT5G07820 1.0kb upstream 1.0kb upstream 3461 true Chr5: 2498749-2502209 Arabidopsis thaliana
AT5G07820 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2501210-2502209 Arabidopsis thaliana
AT5G07820 1.0kb downstream 1.0kb downstream 3461 true Chr5: 2497749-2501209 Arabidopsis thaliana
AT5G07820 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2497749-2498748 Arabidopsis thaliana
AT5G07820 2.0kb upstream 2.0kb upstream 4461 true Chr5: 2498749-2503209 Arabidopsis thaliana
AT5G07820 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2501210-2503209 Arabidopsis thaliana
AT5G07820 2.0kb downstream 2.0kb downstream 4461 true Chr5: 2496749-2501209 Arabidopsis thaliana
AT5G07820 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2496749-2498748 Arabidopsis thaliana
AT5G07820 5.0kb upstream 5.0kb upstream 7461 true Chr5: 2498749-2506209 Arabidopsis thaliana
AT5G07820 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2501210-2506209 Arabidopsis thaliana
AT5G07820 5.0kb downstream 5.0kb downstream 7461 true Chr5: 2493749-2501209 Arabidopsis thaliana
AT5G07820 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2493749-2498748 Arabidopsis thaliana
AT5G07820 10.0kb upstream 10.0kb upstream 12461 true Chr5: 2498749-2511209 Arabidopsis thaliana
AT5G07820 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2501210-2511209 Arabidopsis thaliana
AT5G07820 10.0kb downstream 10.0kb downstream 12461 true Chr5: 2488749-2501209 Arabidopsis thaliana
AT5G07820 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2488749-2498748 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364907 5261 Brassicaceae View MSA
123798859 5264 Brassicales-Malvales View MSA
124296442 5266 SBM View MSA
124251755 5268 Malvidae View MSA
124071368 5270 Rosid View MSA
123747266 5271 Pentapetalae View MSA
122791700 5272 Eudicot View MSA
122049336 5273 Angiosperm View MSA
121311351 5274 Embryophyte View MSA
123348657 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.024       High
cufflinks 5.599        
cufflinks 7.429        
cufflinks 5.418       Low
cufflinks 7.654        
cufflinks 6.098        

0 Strain