Gene : PAS2 A. thaliana TAIR10
Primary Identifier:  ? AT5G10480 Defline:  (1 of 2) 4.2.1.134 - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Genomic Order:  968 Name:  ? AT5G10480
Secondary Identifier:  ? PAC:19667112
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7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5080 Arabidopsis thaliana pathologic  
Athaliana PWY-6433 Arabidopsis thaliana pathologic  
Athaliana PWY-6598 Arabidopsis thaliana pathologic  
Athaliana PWY-7036 Arabidopsis thaliana pathologic  
Athaliana PWY-7601 Arabidopsis thaliana pathologic  
Athaliana PWY-7606 Arabidopsis thaliana pathologic  
Athaliana PWY-7619 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G10480 0.5kb upstream 0.5kb upstream 2848 true Chr5: 3297804-3300651 Arabidopsis thaliana
AT5G10480 0.5kb upstream 0.5kb upstream 500 false Chr5: 3300152-3300651 Arabidopsis thaliana
AT5G10480 0.5kb downstream 0.5kb downstream 2848 true Chr5: 3297304-3300151 Arabidopsis thaliana
AT5G10480 0.5kb downstream 0.5kb downstream 500 false Chr5: 3297304-3297803 Arabidopsis thaliana
AT5G10480 1.0kb upstream 1.0kb upstream 3348 true Chr5: 3297804-3301151 Arabidopsis thaliana
AT5G10480 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3300152-3301151 Arabidopsis thaliana
AT5G10480 1.0kb downstream 1.0kb downstream 3348 true Chr5: 3296804-3300151 Arabidopsis thaliana
AT5G10480 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3296804-3297803 Arabidopsis thaliana
AT5G10480 2.0kb upstream 2.0kb upstream 4348 true Chr5: 3297804-3302151 Arabidopsis thaliana
AT5G10480 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3300152-3302151 Arabidopsis thaliana
AT5G10480 2.0kb downstream 2.0kb downstream 4348 true Chr5: 3295804-3300151 Arabidopsis thaliana
AT5G10480 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3295804-3297803 Arabidopsis thaliana
AT5G10480 5.0kb upstream 5.0kb upstream 7348 true Chr5: 3297804-3305151 Arabidopsis thaliana
AT5G10480 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3300152-3305151 Arabidopsis thaliana
AT5G10480 5.0kb downstream 5.0kb downstream 7348 true Chr5: 3292804-3300151 Arabidopsis thaliana
AT5G10480 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3292804-3297803 Arabidopsis thaliana
AT5G10480 10.0kb upstream 10.0kb upstream 12348 true Chr5: 3297804-3310151 Arabidopsis thaliana
AT5G10480 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3300152-3310151 Arabidopsis thaliana
AT5G10480 10.0kb downstream 10.0kb downstream 12348 true Chr5: 3287804-3300151 Arabidopsis thaliana
AT5G10480 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3287804-3297803 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366878 5261 Brassicaceae View MSA
123835174 5264 Brassicales-Malvales View MSA
124349665 5266 SBM View MSA
124243174 5268 Malvidae View MSA
124067090 5270 Rosid View MSA
123747996 5271 Pentapetalae View MSA
122792245 5272 Eudicot View MSA
122043901 5273 Angiosperm View MSA
121347400 5274 Embryophyte View MSA
123425989 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.678        
cufflinks 4.385        
cufflinks 3.78        
cufflinks 5.688        
cufflinks 3.433       Low
cufflinks 6.28       High

0 Strain