Gene : RING1 A. thaliana TAIR10
Primary Identifier:  ? AT5G10380 Defline:  (1 of 6) K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S)
Genomic Order:  958 Name:  ? AT5G10380
Secondary Identifier:  ? PAC:19671488
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G10380 0.5kb upstream 0.5kb upstream 1679 true Chr5: 3267135-3268813 Arabidopsis thaliana
AT5G10380 0.5kb upstream 0.5kb upstream 500 false Chr5: 3267135-3267634 Arabidopsis thaliana
AT5G10380 0.5kb downstream 0.5kb downstream 1679 true Chr5: 3267635-3269313 Arabidopsis thaliana
AT5G10380 0.5kb downstream 0.5kb downstream 500 false Chr5: 3268814-3269313 Arabidopsis thaliana
AT5G10380 1.0kb upstream 1.0kb upstream 2179 true Chr5: 3266635-3268813 Arabidopsis thaliana
AT5G10380 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3266635-3267634 Arabidopsis thaliana
AT5G10380 1.0kb downstream 1.0kb downstream 2179 true Chr5: 3267635-3269813 Arabidopsis thaliana
AT5G10380 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3268814-3269813 Arabidopsis thaliana
AT5G10380 2.0kb upstream 2.0kb upstream 3179 true Chr5: 3265635-3268813 Arabidopsis thaliana
AT5G10380 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3265635-3267634 Arabidopsis thaliana
AT5G10380 2.0kb downstream 2.0kb downstream 3179 true Chr5: 3267635-3270813 Arabidopsis thaliana
AT5G10380 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3268814-3270813 Arabidopsis thaliana
AT5G10380 5.0kb upstream 5.0kb upstream 6179 true Chr5: 3262635-3268813 Arabidopsis thaliana
AT5G10380 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3262635-3267634 Arabidopsis thaliana
AT5G10380 5.0kb downstream 5.0kb downstream 6179 true Chr5: 3267635-3273813 Arabidopsis thaliana
AT5G10380 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3268814-3273813 Arabidopsis thaliana
AT5G10380 10.0kb upstream 10.0kb upstream 11179 true Chr5: 3257635-3268813 Arabidopsis thaliana
AT5G10380 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3257635-3267634 Arabidopsis thaliana
AT5G10380 10.0kb downstream 10.0kb downstream 11179 true Chr5: 3267635-3278813 Arabidopsis thaliana
AT5G10380 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3268814-3278813 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365468 5261 Brassicaceae View MSA
123798963 5264 Brassicales-Malvales View MSA
124296535 5266 SBM View MSA
124252904 5268 Malvidae View MSA
124071725 5270 Rosid View MSA
123745197 5271 Pentapetalae View MSA
122794608 5272 Eudicot View MSA
122048508 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 117.175     High High
cufflinks 25.91        
cufflinks 37.516     High  
cufflinks 18.906        
cufflinks 75.353     High  
cufflinks 20.946        

0 Strain