Gene : AT5G10090 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22904//PTHR22904:SF358 - TPR REPEAT CONTAINING PROTEIN // CC-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  928
Name:  ? AT5G10090 Secondary Identifier:  ? PAC:19670736
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G10090 0.5kb upstream 0.5kb upstream 2524 true Chr5: 3153722-3156245 Arabidopsis thaliana
AT5G10090 0.5kb upstream 0.5kb upstream 500 false Chr5: 3155746-3156245 Arabidopsis thaliana
AT5G10090 0.5kb downstream 0.5kb downstream 2524 true Chr5: 3153222-3155745 Arabidopsis thaliana
AT5G10090 0.5kb downstream 0.5kb downstream 500 false Chr5: 3153222-3153721 Arabidopsis thaliana
AT5G10090 1.0kb upstream 1.0kb upstream 3024 true Chr5: 3153722-3156745 Arabidopsis thaliana
AT5G10090 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3155746-3156745 Arabidopsis thaliana
AT5G10090 1.0kb downstream 1.0kb downstream 3024 true Chr5: 3152722-3155745 Arabidopsis thaliana
AT5G10090 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3152722-3153721 Arabidopsis thaliana
AT5G10090 2.0kb upstream 2.0kb upstream 4024 true Chr5: 3153722-3157745 Arabidopsis thaliana
AT5G10090 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3155746-3157745 Arabidopsis thaliana
AT5G10090 2.0kb downstream 2.0kb downstream 4024 true Chr5: 3151722-3155745 Arabidopsis thaliana
AT5G10090 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3151722-3153721 Arabidopsis thaliana
AT5G10090 5.0kb upstream 5.0kb upstream 7024 true Chr5: 3153722-3160745 Arabidopsis thaliana
AT5G10090 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3155746-3160745 Arabidopsis thaliana
AT5G10090 5.0kb downstream 5.0kb downstream 7024 true Chr5: 3148722-3155745 Arabidopsis thaliana
AT5G10090 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3148722-3153721 Arabidopsis thaliana
AT5G10090 10.0kb upstream 10.0kb upstream 12024 true Chr5: 3153722-3165745 Arabidopsis thaliana
AT5G10090 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3155746-3165745 Arabidopsis thaliana
AT5G10090 10.0kb downstream 10.0kb downstream 12024 true Chr5: 3143722-3155745 Arabidopsis thaliana
AT5G10090 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3143722-3153721 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365612 5261 Brassicaceae View MSA
123838346 5264 Brassicales-Malvales View MSA
124343835 5266 SBM View MSA
124254049 5268 Malvidae View MSA
124063288 5270 Rosid View MSA
123737789 5271 Pentapetalae View MSA
122790297 5272 Eudicot View MSA
122047040 5273 Angiosperm View MSA
121310683 5274 Embryophyte View MSA
123348108 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.043     Low High
cufflinks 0.015     Low  
cufflinks 0.025     Low  
cufflinks 0.008     Low  

0 Strain