Gene : AT5G09840 A. thaliana TAIR10
Defline:  (1 of 2) PTHR14379//PTHR14379:SF6 - LIMKAIN B LKAP // EMB|CAB71880.1 Genomic Order:  899
Name:  ? AT5G09840 Secondary Identifier:  ? PAC:19667769
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G09840 0.5kb upstream 0.5kb upstream 3474 true Chr5: 3058497-3061970 Arabidopsis thaliana
AT5G09840 0.5kb upstream 0.5kb upstream 500 false Chr5: 3058497-3058996 Arabidopsis thaliana
AT5G09840 0.5kb downstream 0.5kb downstream 3474 true Chr5: 3058997-3062470 Arabidopsis thaliana
AT5G09840 0.5kb downstream 0.5kb downstream 500 false Chr5: 3061971-3062470 Arabidopsis thaliana
AT5G09840 1.0kb upstream 1.0kb upstream 3974 true Chr5: 3057997-3061970 Arabidopsis thaliana
AT5G09840 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3057997-3058996 Arabidopsis thaliana
AT5G09840 1.0kb downstream 1.0kb downstream 3974 true Chr5: 3058997-3062970 Arabidopsis thaliana
AT5G09840 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3061971-3062970 Arabidopsis thaliana
AT5G09840 2.0kb upstream 2.0kb upstream 4974 true Chr5: 3056997-3061970 Arabidopsis thaliana
AT5G09840 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3056997-3058996 Arabidopsis thaliana
AT5G09840 2.0kb downstream 2.0kb downstream 4974 true Chr5: 3058997-3063970 Arabidopsis thaliana
AT5G09840 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3061971-3063970 Arabidopsis thaliana
AT5G09840 5.0kb upstream 5.0kb upstream 7974 true Chr5: 3053997-3061970 Arabidopsis thaliana
AT5G09840 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3053997-3058996 Arabidopsis thaliana
AT5G09840 5.0kb downstream 5.0kb downstream 7974 true Chr5: 3058997-3066970 Arabidopsis thaliana
AT5G09840 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3061971-3066970 Arabidopsis thaliana
AT5G09840 10.0kb upstream 10.0kb upstream 12974 true Chr5: 3048997-3061970 Arabidopsis thaliana
AT5G09840 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3048997-3058996 Arabidopsis thaliana
AT5G09840 10.0kb downstream 10.0kb downstream 12974 true Chr5: 3058997-3071970 Arabidopsis thaliana
AT5G09840 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3061971-3071970 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362460 5261 Brassicaceae View MSA
123833004 5264 Brassicales-Malvales View MSA
124345878 5266 SBM View MSA
124252056 5268 Malvidae View MSA
124065128 5270 Rosid View MSA
123747912 5271 Pentapetalae View MSA
122785708 5272 Eudicot View MSA
122049513 5273 Angiosperm View MSA
121311448 5274 Embryophyte View MSA
123348743 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.144        
cufflinks 3.226        
cufflinks 1.235       Low
cufflinks 3.295        
cufflinks 1.065       Low
cufflinks 4.505       High

0 Strain