Gene : AT5G09850 A. thaliana TAIR10
Defline:  (1 of 11) PTHR15141 - TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3 Genomic Order:  900
Name:  ? AT5G09850 Secondary Identifier:  ? PAC:19665917
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G09850 0.5kb upstream 0.5kb upstream 3139 true Chr5: 3063251-3066389 Arabidopsis thaliana
AT5G09850 0.5kb upstream 0.5kb upstream 500 false Chr5: 3065890-3066389 Arabidopsis thaliana
AT5G09850 0.5kb downstream 0.5kb downstream 3139 true Chr5: 3062751-3065889 Arabidopsis thaliana
AT5G09850 0.5kb downstream 0.5kb downstream 500 false Chr5: 3062751-3063250 Arabidopsis thaliana
AT5G09850 1.0kb upstream 1.0kb upstream 3639 true Chr5: 3063251-3066889 Arabidopsis thaliana
AT5G09850 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3065890-3066889 Arabidopsis thaliana
AT5G09850 1.0kb downstream 1.0kb downstream 3639 true Chr5: 3062251-3065889 Arabidopsis thaliana
AT5G09850 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3062251-3063250 Arabidopsis thaliana
AT5G09850 2.0kb upstream 2.0kb upstream 4639 true Chr5: 3063251-3067889 Arabidopsis thaliana
AT5G09850 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3065890-3067889 Arabidopsis thaliana
AT5G09850 2.0kb downstream 2.0kb downstream 4639 true Chr5: 3061251-3065889 Arabidopsis thaliana
AT5G09850 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3061251-3063250 Arabidopsis thaliana
AT5G09850 5.0kb upstream 5.0kb upstream 7639 true Chr5: 3063251-3070889 Arabidopsis thaliana
AT5G09850 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3065890-3070889 Arabidopsis thaliana
AT5G09850 5.0kb downstream 5.0kb downstream 7639 true Chr5: 3058251-3065889 Arabidopsis thaliana
AT5G09850 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3058251-3063250 Arabidopsis thaliana
AT5G09850 10.0kb upstream 10.0kb upstream 12639 true Chr5: 3063251-3075889 Arabidopsis thaliana
AT5G09850 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3065890-3075889 Arabidopsis thaliana
AT5G09850 10.0kb downstream 10.0kb downstream 12639 true Chr5: 3053251-3065889 Arabidopsis thaliana
AT5G09850 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3053251-3063250 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360758 5261 Brassicaceae View MSA
123837314 5264 Brassicales-Malvales View MSA
124349395 5266 SBM View MSA
124243925 5268 Malvidae View MSA
124072359 5270 Rosid View MSA
123737079 5271 Pentapetalae View MSA
122790129 5272 Eudicot View MSA
122047602 5273 Angiosperm View MSA
121348214 5274 Embryophyte View MSA
123380774 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.285     High  
cufflinks 40.253     High  
cufflinks 27.598     High  
cufflinks 40.406     High  
cufflinks 26.697     High Low
cufflinks 40.649     High  

0 Strain