Gene : PMDH2 A. thaliana TAIR10
Primary Identifier:  ? AT5G09660 Defline:  (1 of 1) PTHR11540:SF21 - MALATE DEHYDROGENASE, GLYOXYSOMAL
Genomic Order:  878 Name:  ? AT5G09660
Secondary Identifier:  ? PAC:19668666
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLUCONEO-PWY Arabidopsis thaliana pathologic  
Athaliana GLYOXYLATE-BYPASS Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  
Athaliana PWY66-399 Arabidopsis thaliana pathologic  
Athaliana PWY-7115 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G09660 0.5kb upstream 0.5kb upstream 2732 true Chr5: 2993444-2996175 Arabidopsis thaliana
AT5G09660 0.5kb upstream 0.5kb upstream 500 false Chr5: 2995676-2996175 Arabidopsis thaliana
AT5G09660 0.5kb downstream 0.5kb downstream 2732 true Chr5: 2992944-2995675 Arabidopsis thaliana
AT5G09660 0.5kb downstream 0.5kb downstream 500 false Chr5: 2992944-2993443 Arabidopsis thaliana
AT5G09660 1.0kb upstream 1.0kb upstream 3232 true Chr5: 2993444-2996675 Arabidopsis thaliana
AT5G09660 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2995676-2996675 Arabidopsis thaliana
AT5G09660 1.0kb downstream 1.0kb downstream 3232 true Chr5: 2992444-2995675 Arabidopsis thaliana
AT5G09660 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2992444-2993443 Arabidopsis thaliana
AT5G09660 2.0kb upstream 2.0kb upstream 4232 true Chr5: 2993444-2997675 Arabidopsis thaliana
AT5G09660 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2995676-2997675 Arabidopsis thaliana
AT5G09660 2.0kb downstream 2.0kb downstream 4232 true Chr5: 2991444-2995675 Arabidopsis thaliana
AT5G09660 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2991444-2993443 Arabidopsis thaliana
AT5G09660 5.0kb upstream 5.0kb upstream 7232 true Chr5: 2993444-3000675 Arabidopsis thaliana
AT5G09660 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2995676-3000675 Arabidopsis thaliana
AT5G09660 5.0kb downstream 5.0kb downstream 7232 true Chr5: 2988444-2995675 Arabidopsis thaliana
AT5G09660 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2988444-2993443 Arabidopsis thaliana
AT5G09660 10.0kb upstream 10.0kb upstream 12232 true Chr5: 2993444-3005675 Arabidopsis thaliana
AT5G09660 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2995676-3005675 Arabidopsis thaliana
AT5G09660 10.0kb downstream 10.0kb downstream 12232 true Chr5: 2983444-2995675 Arabidopsis thaliana
AT5G09660 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2983444-2993443 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368946 5261 Brassicaceae View MSA
123839952 5264 Brassicales-Malvales View MSA
124348581 5266 SBM View MSA
124236845 5268 Malvidae View MSA
124072228 5270 Rosid View MSA
123748567 5271 Pentapetalae View MSA
122789839 5272 Eudicot View MSA
122041534 5273 Angiosperm View MSA
121344614 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 95.178     High  
cufflinks 0.07     Low  
cufflinks 102.536     High  
cufflinks 0.082     Low  
cufflinks 110.181     High  
cufflinks 0.107     Low  

0 Strain