Gene : AT5G09530 A. thaliana TAIR10
Defline:  (1 of 1) PTHR33088//PTHR33088:SF9 - FAMILY NOT NAMED // HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  865
Name:  ? AT5G09530 Secondary Identifier:  ? PAC:19668766
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G09530 0.5kb upstream 0.5kb upstream 2038 true Chr5: 2959734-2961771 Arabidopsis thaliana
AT5G09530 0.5kb upstream 0.5kb upstream 500 false Chr5: 2961272-2961771 Arabidopsis thaliana
AT5G09530 0.5kb downstream 0.5kb downstream 2038 true Chr5: 2959234-2961271 Arabidopsis thaliana
AT5G09530 0.5kb downstream 0.5kb downstream 500 false Chr5: 2959234-2959733 Arabidopsis thaliana
AT5G09530 1.0kb upstream 1.0kb upstream 2538 true Chr5: 2959734-2962271 Arabidopsis thaliana
AT5G09530 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2961272-2962271 Arabidopsis thaliana
AT5G09530 1.0kb downstream 1.0kb downstream 2538 true Chr5: 2958734-2961271 Arabidopsis thaliana
AT5G09530 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2958734-2959733 Arabidopsis thaliana
AT5G09530 2.0kb upstream 2.0kb upstream 3538 true Chr5: 2959734-2963271 Arabidopsis thaliana
AT5G09530 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2961272-2963271 Arabidopsis thaliana
AT5G09530 2.0kb downstream 2.0kb downstream 3538 true Chr5: 2957734-2961271 Arabidopsis thaliana
AT5G09530 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2957734-2959733 Arabidopsis thaliana
AT5G09530 5.0kb upstream 5.0kb upstream 6538 true Chr5: 2959734-2966271 Arabidopsis thaliana
AT5G09530 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2961272-2966271 Arabidopsis thaliana
AT5G09530 5.0kb downstream 5.0kb downstream 6538 true Chr5: 2954734-2961271 Arabidopsis thaliana
AT5G09530 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2954734-2959733 Arabidopsis thaliana
AT5G09530 10.0kb upstream 10.0kb upstream 11538 true Chr5: 2959734-2971271 Arabidopsis thaliana
AT5G09530 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2961272-2971271 Arabidopsis thaliana
AT5G09530 10.0kb downstream 10.0kb downstream 11538 true Chr5: 2949734-2961271 Arabidopsis thaliana
AT5G09530 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2949734-2959733 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381301 5261 Brassicaceae View MSA
123841685 5264 Brassicales-Malvales View MSA
124348603 5266 SBM View MSA
124254318 5268 Malvidae View MSA
124071765 5270 Rosid View MSA
123753028 5271 Pentapetalae View MSA
122796591 5272 Eudicot View MSA
122051631 5273 Angiosperm View MSA
121349317 5274 Embryophyte View MSA
123381274 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.051        
cufflinks 33.915     High  
cufflinks 0.231     Low Low
cufflinks 61.526     High  
cufflinks 2.008        
cufflinks 87.344     High High

0 Strain