Gene : AT5G12240 A. thaliana TAIR10
Genomic Order:  1152 Name:  ? AT5G12240
Secondary Identifier:  ? PAC:19672252
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G12240 0.5kb upstream 0.5kb upstream 2445 true Chr5: 3958901-3961345 Arabidopsis thaliana
AT5G12240 0.5kb upstream 0.5kb upstream 500 false Chr5: 3960846-3961345 Arabidopsis thaliana
AT5G12240 0.5kb downstream 0.5kb downstream 2445 true Chr5: 3958401-3960845 Arabidopsis thaliana
AT5G12240 0.5kb downstream 0.5kb downstream 500 false Chr5: 3958401-3958900 Arabidopsis thaliana
AT5G12240 1.0kb upstream 1.0kb upstream 2945 true Chr5: 3958901-3961845 Arabidopsis thaliana
AT5G12240 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3960846-3961845 Arabidopsis thaliana
AT5G12240 1.0kb downstream 1.0kb downstream 2945 true Chr5: 3957901-3960845 Arabidopsis thaliana
AT5G12240 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3957901-3958900 Arabidopsis thaliana
AT5G12240 2.0kb upstream 2.0kb upstream 3945 true Chr5: 3958901-3962845 Arabidopsis thaliana
AT5G12240 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3960846-3962845 Arabidopsis thaliana
AT5G12240 2.0kb downstream 2.0kb downstream 3945 true Chr5: 3956901-3960845 Arabidopsis thaliana
AT5G12240 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3956901-3958900 Arabidopsis thaliana
AT5G12240 5.0kb upstream 5.0kb upstream 6945 true Chr5: 3958901-3965845 Arabidopsis thaliana
AT5G12240 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3960846-3965845 Arabidopsis thaliana
AT5G12240 5.0kb downstream 5.0kb downstream 6945 true Chr5: 3953901-3960845 Arabidopsis thaliana
AT5G12240 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3953901-3958900 Arabidopsis thaliana
AT5G12240 10.0kb upstream 10.0kb upstream 11945 true Chr5: 3958901-3970845 Arabidopsis thaliana
AT5G12240 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3960846-3970845 Arabidopsis thaliana
AT5G12240 10.0kb downstream 10.0kb downstream 11945 true Chr5: 3948901-3960845 Arabidopsis thaliana
AT5G12240 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3948901-3958900 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331431 5261 Brassicaceae Singleton cluster - no MSA
123772618 5264 Brassicales-Malvales Singleton cluster - no MSA
124271127 5266 SBM Singleton cluster - no MSA
124247757 5268 Malvidae View MSA
124069290 5270 Rosid View MSA
123748096 5271 Pentapetalae View MSA
122795244 5272 Eudicot View MSA
122048396 5273 Angiosperm View MSA
121348590 5274 Embryophyte View MSA
123380928 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.123        
cufflinks 4.782        
cufflinks 2.929        
cufflinks 4.761        
cufflinks 2.919        
cufflinks 5.162       High

0 Strain