Gene : PDE149 A. thaliana TAIR10
Primary Identifier:  ? AT5G12130 Defline:  (1 of 1) PTHR30238:SF0 - PROTEIN PIGMENT DEFECTIVE 149
Genomic Order:  1140 Name:  ? AT5G12130
Secondary Identifier:  ? PAC:19671144
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G12130 0.5kb upstream 0.5kb upstream 3392 true Chr5: 3919094-3922485 Arabidopsis thaliana
AT5G12130 0.5kb upstream 0.5kb upstream 500 false Chr5: 3919094-3919593 Arabidopsis thaliana
AT5G12130 0.5kb downstream 0.5kb downstream 3392 true Chr5: 3919594-3922985 Arabidopsis thaliana
AT5G12130 0.5kb downstream 0.5kb downstream 500 false Chr5: 3922486-3922985 Arabidopsis thaliana
AT5G12130 1.0kb upstream 1.0kb upstream 3892 true Chr5: 3918594-3922485 Arabidopsis thaliana
AT5G12130 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3918594-3919593 Arabidopsis thaliana
AT5G12130 1.0kb downstream 1.0kb downstream 3892 true Chr5: 3919594-3923485 Arabidopsis thaliana
AT5G12130 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3922486-3923485 Arabidopsis thaliana
AT5G12130 2.0kb upstream 2.0kb upstream 4892 true Chr5: 3917594-3922485 Arabidopsis thaliana
AT5G12130 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3917594-3919593 Arabidopsis thaliana
AT5G12130 2.0kb downstream 2.0kb downstream 4892 true Chr5: 3919594-3924485 Arabidopsis thaliana
AT5G12130 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3922486-3924485 Arabidopsis thaliana
AT5G12130 5.0kb upstream 5.0kb upstream 7892 true Chr5: 3914594-3922485 Arabidopsis thaliana
AT5G12130 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3914594-3919593 Arabidopsis thaliana
AT5G12130 5.0kb downstream 5.0kb downstream 7892 true Chr5: 3919594-3927485 Arabidopsis thaliana
AT5G12130 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3922486-3927485 Arabidopsis thaliana
AT5G12130 10.0kb upstream 10.0kb upstream 12892 true Chr5: 3909594-3922485 Arabidopsis thaliana
AT5G12130 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3909594-3919593 Arabidopsis thaliana
AT5G12130 10.0kb downstream 10.0kb downstream 12892 true Chr5: 3919594-3932485 Arabidopsis thaliana
AT5G12130 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3922486-3932485 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026321 5273 Angiosperm View MSA
122366961 5261 Brassicaceae View MSA
123832955 5264 Brassicales-Malvales View MSA
124337641 5266 SBM View MSA
124250090 5268 Malvidae View MSA
124064171 5270 Rosid View MSA
123748654 5271 Pentapetalae View MSA
122791010 5272 Eudicot View MSA
121349426 5274 Embryophyte View MSA
123424964 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.987       High
cufflinks 4.677        
cufflinks 13.56        
cufflinks 4.382        
cufflinks 13.089        
cufflinks 3.885       Low

0 Strain