Gene : AT5G11960 A. thaliana TAIR10
Defline:  (1 of 8) KOG2922 - Uncharacterized conserved protein Genomic Order:  1122
Name:  ? AT5G11960 Secondary Identifier:  ? PAC:19669050
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G11960 0.5kb upstream 0.5kb upstream 3437 true Chr5: 3858579-3862015 Arabidopsis thaliana
AT5G11960 0.5kb upstream 0.5kb upstream 500 false Chr5: 3861516-3862015 Arabidopsis thaliana
AT5G11960 0.5kb downstream 0.5kb downstream 3437 true Chr5: 3858079-3861515 Arabidopsis thaliana
AT5G11960 0.5kb downstream 0.5kb downstream 500 false Chr5: 3858079-3858578 Arabidopsis thaliana
AT5G11960 1.0kb upstream 1.0kb upstream 3937 true Chr5: 3858579-3862515 Arabidopsis thaliana
AT5G11960 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3861516-3862515 Arabidopsis thaliana
AT5G11960 1.0kb downstream 1.0kb downstream 3937 true Chr5: 3857579-3861515 Arabidopsis thaliana
AT5G11960 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3857579-3858578 Arabidopsis thaliana
AT5G11960 2.0kb upstream 2.0kb upstream 4937 true Chr5: 3858579-3863515 Arabidopsis thaliana
AT5G11960 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3861516-3863515 Arabidopsis thaliana
AT5G11960 2.0kb downstream 2.0kb downstream 4937 true Chr5: 3856579-3861515 Arabidopsis thaliana
AT5G11960 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3856579-3858578 Arabidopsis thaliana
AT5G11960 5.0kb upstream 5.0kb upstream 7937 true Chr5: 3858579-3866515 Arabidopsis thaliana
AT5G11960 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3861516-3866515 Arabidopsis thaliana
AT5G11960 5.0kb downstream 5.0kb downstream 7937 true Chr5: 3853579-3861515 Arabidopsis thaliana
AT5G11960 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3853579-3858578 Arabidopsis thaliana
AT5G11960 10.0kb upstream 10.0kb upstream 12937 true Chr5: 3858579-3871515 Arabidopsis thaliana
AT5G11960 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3861516-3871515 Arabidopsis thaliana
AT5G11960 10.0kb downstream 10.0kb downstream 12937 true Chr5: 3848579-3861515 Arabidopsis thaliana
AT5G11960 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3848579-3858578 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367211 5261 Brassicaceae View MSA
123831114 5264 Brassicales-Malvales View MSA
124343354 5266 SBM View MSA
124238082 5268 Malvidae View MSA
124065419 5270 Rosid View MSA
123737318 5271 Pentapetalae View MSA
122791606 5272 Eudicot View MSA
122046404 5273 Angiosperm View MSA
121346413 5274 Embryophyte View MSA
123423946 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.175        
cufflinks 12.51       High
cufflinks 7.493       Low
cufflinks 11.974        
cufflinks 8.497        
cufflinks 11.54        

0 Strain