Gene : AT5G11980 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21311:SF0 - CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 8 Genomic Order:  1124
Name:  ? AT5G11980 Secondary Identifier:  ? PAC:19669663
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G11980 0.5kb upstream 0.5kb upstream 4118 true Chr5: 3868652-3872769 Arabidopsis thaliana
AT5G11980 0.5kb upstream 0.5kb upstream 500 false Chr5: 3872270-3872769 Arabidopsis thaliana
AT5G11980 0.5kb downstream 0.5kb downstream 4118 true Chr5: 3868152-3872269 Arabidopsis thaliana
AT5G11980 0.5kb downstream 0.5kb downstream 500 false Chr5: 3868152-3868651 Arabidopsis thaliana
AT5G11980 1.0kb upstream 1.0kb upstream 4618 true Chr5: 3868652-3873269 Arabidopsis thaliana
AT5G11980 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3872270-3873269 Arabidopsis thaliana
AT5G11980 1.0kb downstream 1.0kb downstream 4618 true Chr5: 3867652-3872269 Arabidopsis thaliana
AT5G11980 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3867652-3868651 Arabidopsis thaliana
AT5G11980 2.0kb upstream 2.0kb upstream 5618 true Chr5: 3868652-3874269 Arabidopsis thaliana
AT5G11980 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3872270-3874269 Arabidopsis thaliana
AT5G11980 2.0kb downstream 2.0kb downstream 5618 true Chr5: 3866652-3872269 Arabidopsis thaliana
AT5G11980 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3866652-3868651 Arabidopsis thaliana
AT5G11980 5.0kb upstream 5.0kb upstream 8618 true Chr5: 3868652-3877269 Arabidopsis thaliana
AT5G11980 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3872270-3877269 Arabidopsis thaliana
AT5G11980 5.0kb downstream 5.0kb downstream 8618 true Chr5: 3863652-3872269 Arabidopsis thaliana
AT5G11980 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3863652-3868651 Arabidopsis thaliana
AT5G11980 10.0kb upstream 10.0kb upstream 13618 true Chr5: 3868652-3882269 Arabidopsis thaliana
AT5G11980 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3872270-3882269 Arabidopsis thaliana
AT5G11980 10.0kb downstream 10.0kb downstream 13618 true Chr5: 3858652-3872269 Arabidopsis thaliana
AT5G11980 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3858652-3868651 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374942 5261 Brassicaceae View MSA
123830476 5264 Brassicales-Malvales View MSA
124345816 5266 SBM View MSA
124240961 5268 Malvidae View MSA
124061559 5270 Rosid View MSA
123740845 5271 Pentapetalae View MSA
122786873 5272 Eudicot View MSA
122042545 5273 Angiosperm View MSA
121347456 5274 Embryophyte View MSA
123426400 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.637        
cufflinks 11.458        
cufflinks 6.404        
cufflinks 12.955        
cufflinks 6.417        
cufflinks 13.384       High

0 Strain