Gene : AT5G12010 A. thaliana TAIR10
Defline:  (1 of 8) KOG4585 - Predicted transposase Genomic Order:  1127
Name:  ? AT5G12010 Secondary Identifier:  ? PAC:19667360
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G12010 0.5kb upstream 0.5kb upstream 2228 true Chr5: 3877812-3880039 Arabidopsis thaliana
AT5G12010 0.5kb upstream 0.5kb upstream 500 false Chr5: 3879540-3880039 Arabidopsis thaliana
AT5G12010 0.5kb downstream 0.5kb downstream 2228 true Chr5: 3877312-3879539 Arabidopsis thaliana
AT5G12010 0.5kb downstream 0.5kb downstream 500 false Chr5: 3877312-3877811 Arabidopsis thaliana
AT5G12010 1.0kb upstream 1.0kb upstream 2728 true Chr5: 3877812-3880539 Arabidopsis thaliana
AT5G12010 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3879540-3880539 Arabidopsis thaliana
AT5G12010 1.0kb downstream 1.0kb downstream 2728 true Chr5: 3876812-3879539 Arabidopsis thaliana
AT5G12010 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3876812-3877811 Arabidopsis thaliana
AT5G12010 2.0kb upstream 2.0kb upstream 3728 true Chr5: 3877812-3881539 Arabidopsis thaliana
AT5G12010 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3879540-3881539 Arabidopsis thaliana
AT5G12010 2.0kb downstream 2.0kb downstream 3728 true Chr5: 3875812-3879539 Arabidopsis thaliana
AT5G12010 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3875812-3877811 Arabidopsis thaliana
AT5G12010 5.0kb upstream 5.0kb upstream 6728 true Chr5: 3877812-3884539 Arabidopsis thaliana
AT5G12010 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3879540-3884539 Arabidopsis thaliana
AT5G12010 5.0kb downstream 5.0kb downstream 6728 true Chr5: 3872812-3879539 Arabidopsis thaliana
AT5G12010 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3872812-3877811 Arabidopsis thaliana
AT5G12010 10.0kb upstream 10.0kb upstream 11728 true Chr5: 3877812-3889539 Arabidopsis thaliana
AT5G12010 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3879540-3889539 Arabidopsis thaliana
AT5G12010 10.0kb downstream 10.0kb downstream 11728 true Chr5: 3867812-3879539 Arabidopsis thaliana
AT5G12010 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3867812-3877811 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332074 5261 Brassicaceae View MSA
123832010 5264 Brassicales-Malvales View MSA
124321766 5266 SBM View MSA
124248021 5268 Malvidae View MSA
124072686 5270 Rosid View MSA
123741393 5271 Pentapetalae View MSA
122770042 5272 Eudicot View MSA
122051358 5273 Angiosperm View MSA
121345285 5274 Embryophyte View MSA
123380187 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.701        
cufflinks 20.046        
cufflinks 10.951       Low
cufflinks 22.833        
cufflinks 11.396       Low
cufflinks 25.068       High

0 Strain