Gene : AT5G11780 A. thaliana TAIR10
Genomic Order:  1104 Name:  ? AT5G11780
Secondary Identifier:  ? PAC:19665248
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G11780 0.5kb upstream 0.5kb upstream 2785 true Chr5: 3793358-3796142 Arabidopsis thaliana
AT5G11780 0.5kb upstream 0.5kb upstream 500 false Chr5: 3793358-3793857 Arabidopsis thaliana
AT5G11780 0.5kb downstream 0.5kb downstream 2785 true Chr5: 3793858-3796642 Arabidopsis thaliana
AT5G11780 0.5kb downstream 0.5kb downstream 500 false Chr5: 3796143-3796642 Arabidopsis thaliana
AT5G11780 1.0kb upstream 1.0kb upstream 3285 true Chr5: 3792858-3796142 Arabidopsis thaliana
AT5G11780 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3792858-3793857 Arabidopsis thaliana
AT5G11780 1.0kb downstream 1.0kb downstream 3285 true Chr5: 3793858-3797142 Arabidopsis thaliana
AT5G11780 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3796143-3797142 Arabidopsis thaliana
AT5G11780 2.0kb upstream 2.0kb upstream 4285 true Chr5: 3791858-3796142 Arabidopsis thaliana
AT5G11780 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3791858-3793857 Arabidopsis thaliana
AT5G11780 2.0kb downstream 2.0kb downstream 4285 true Chr5: 3793858-3798142 Arabidopsis thaliana
AT5G11780 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3796143-3798142 Arabidopsis thaliana
AT5G11780 5.0kb upstream 5.0kb upstream 7285 true Chr5: 3788858-3796142 Arabidopsis thaliana
AT5G11780 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3788858-3793857 Arabidopsis thaliana
AT5G11780 5.0kb downstream 5.0kb downstream 7285 true Chr5: 3793858-3801142 Arabidopsis thaliana
AT5G11780 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3796143-3801142 Arabidopsis thaliana
AT5G11780 10.0kb upstream 10.0kb upstream 12285 true Chr5: 3783858-3796142 Arabidopsis thaliana
AT5G11780 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3783858-3793857 Arabidopsis thaliana
AT5G11780 10.0kb downstream 10.0kb downstream 12285 true Chr5: 3793858-3806142 Arabidopsis thaliana
AT5G11780 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3796143-3806142 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026555 5273 Angiosperm View MSA
122360446 5261 Brassicaceae View MSA
123828400 5264 Brassicales-Malvales View MSA
124341095 5266 SBM View MSA
124246680 5268 Malvidae View MSA
124070957 5270 Rosid View MSA
123740647 5271 Pentapetalae View MSA
122788070 5272 Eudicot View MSA
121349076 5274 Embryophyte View MSA
123381154 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.891        
cufflinks 2.562        
cufflinks 0.687       Low
cufflinks 2.146        
cufflinks 0.683       Low
cufflinks 2.76       High

0 Strain