Gene : AT5G11550 A. thaliana TAIR10
Defline:  (1 of 1) PTHR22849//PTHR22849:SF35 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1081
Name:  ? AT5G11550 Secondary Identifier:  ? PAC:19665498
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G11550 0.5kb upstream 0.5kb upstream 1738 true Chr5: 3708009-3709746 Arabidopsis thaliana
AT5G11550 0.5kb upstream 0.5kb upstream 500 false Chr5: 3709247-3709746 Arabidopsis thaliana
AT5G11550 0.5kb downstream 0.5kb downstream 1738 true Chr5: 3707509-3709246 Arabidopsis thaliana
AT5G11550 0.5kb downstream 0.5kb downstream 500 false Chr5: 3707509-3708008 Arabidopsis thaliana
AT5G11550 1.0kb upstream 1.0kb upstream 2238 true Chr5: 3708009-3710246 Arabidopsis thaliana
AT5G11550 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3709247-3710246 Arabidopsis thaliana
AT5G11550 1.0kb downstream 1.0kb downstream 2238 true Chr5: 3707009-3709246 Arabidopsis thaliana
AT5G11550 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3707009-3708008 Arabidopsis thaliana
AT5G11550 2.0kb upstream 2.0kb upstream 3238 true Chr5: 3708009-3711246 Arabidopsis thaliana
AT5G11550 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3709247-3711246 Arabidopsis thaliana
AT5G11550 2.0kb downstream 2.0kb downstream 3238 true Chr5: 3706009-3709246 Arabidopsis thaliana
AT5G11550 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3706009-3708008 Arabidopsis thaliana
AT5G11550 5.0kb upstream 5.0kb upstream 6238 true Chr5: 3708009-3714246 Arabidopsis thaliana
AT5G11550 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3709247-3714246 Arabidopsis thaliana
AT5G11550 5.0kb downstream 5.0kb downstream 6238 true Chr5: 3703009-3709246 Arabidopsis thaliana
AT5G11550 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3703009-3708008 Arabidopsis thaliana
AT5G11550 10.0kb upstream 10.0kb upstream 11238 true Chr5: 3708009-3719246 Arabidopsis thaliana
AT5G11550 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3709247-3719246 Arabidopsis thaliana
AT5G11550 10.0kb downstream 10.0kb downstream 11238 true Chr5: 3698009-3709246 Arabidopsis thaliana
AT5G11550 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3698009-3708008 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026303 5273 Angiosperm View MSA
122364323 5261 Brassicaceae View MSA
123834827 5264 Brassicales-Malvales View MSA
124341697 5266 SBM View MSA
124243649 5268 Malvidae View MSA
124063764 5270 Rosid View MSA
123738451 5271 Pentapetalae View MSA
122786452 5272 Eudicot View MSA
121351765 5274 Embryophyte View MSA
123382312 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.161        
cufflinks 8.469        
cufflinks 7.473        
cufflinks 7.341        
cufflinks 3.685       Low
cufflinks 9.601        

0 Strain