Gene : AT5G11610 A. thaliana TAIR10
Defline:  (1 of 3) PTHR11062//PTHR11062:SF108 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED // EXOSTOSIN FAMILY PROTEIN Genomic Order:  1087
Name:  ? AT5G11610 Secondary Identifier:  ? PAC:19670611
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5980 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G11610 0.5kb upstream 0.5kb upstream 3368 true Chr5: 3735350-3738717 Arabidopsis thaliana
AT5G11610 0.5kb upstream 0.5kb upstream 500 false Chr5: 3738218-3738717 Arabidopsis thaliana
AT5G11610 0.5kb downstream 0.5kb downstream 3368 true Chr5: 3734850-3738217 Arabidopsis thaliana
AT5G11610 0.5kb downstream 0.5kb downstream 500 false Chr5: 3734850-3735349 Arabidopsis thaliana
AT5G11610 1.0kb upstream 1.0kb upstream 3868 true Chr5: 3735350-3739217 Arabidopsis thaliana
AT5G11610 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3738218-3739217 Arabidopsis thaliana
AT5G11610 1.0kb downstream 1.0kb downstream 3868 true Chr5: 3734350-3738217 Arabidopsis thaliana
AT5G11610 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3734350-3735349 Arabidopsis thaliana
AT5G11610 2.0kb upstream 2.0kb upstream 4868 true Chr5: 3735350-3740217 Arabidopsis thaliana
AT5G11610 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3738218-3740217 Arabidopsis thaliana
AT5G11610 2.0kb downstream 2.0kb downstream 4868 true Chr5: 3733350-3738217 Arabidopsis thaliana
AT5G11610 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3733350-3735349 Arabidopsis thaliana
AT5G11610 5.0kb upstream 5.0kb upstream 7868 true Chr5: 3735350-3743217 Arabidopsis thaliana
AT5G11610 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3738218-3743217 Arabidopsis thaliana
AT5G11610 5.0kb downstream 5.0kb downstream 7868 true Chr5: 3730350-3738217 Arabidopsis thaliana
AT5G11610 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3730350-3735349 Arabidopsis thaliana
AT5G11610 10.0kb upstream 10.0kb upstream 12868 true Chr5: 3735350-3748217 Arabidopsis thaliana
AT5G11610 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3738218-3748217 Arabidopsis thaliana
AT5G11610 10.0kb downstream 10.0kb downstream 12868 true Chr5: 3725350-3738217 Arabidopsis thaliana
AT5G11610 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3725350-3735349 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792376 5273 Angiosperm View MSA
122378938 5261 Brassicaceae View MSA
123802041 5264 Brassicales-Malvales View MSA
124299266 5266 SBM View MSA
124251013 5268 Malvidae View MSA
124067296 5270 Rosid View MSA
123744502 5271 Pentapetalae View MSA
122797581 5272 Eudicot View MSA
121349832 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.016        
cufflinks 0.412        
cufflinks 3.636        
cufflinks 0.388     Low  
cufflinks 4.845       High
cufflinks 0.206     Low Low

0 Strain