Gene : AT5G11480 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11649//PTHR11649:SF49 - MSS1/TRME-RELATED GTP-BINDING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1074
Name:  ? AT5G11480 Secondary Identifier:  ? PAC:19666264
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G11480 0.5kb upstream 0.5kb upstream 2882 true Chr5: 3669193-3672074 Arabidopsis thaliana
AT5G11480 0.5kb upstream 0.5kb upstream 500 false Chr5: 3671575-3672074 Arabidopsis thaliana
AT5G11480 0.5kb downstream 0.5kb downstream 2882 true Chr5: 3668693-3671574 Arabidopsis thaliana
AT5G11480 0.5kb downstream 0.5kb downstream 500 false Chr5: 3668693-3669192 Arabidopsis thaliana
AT5G11480 1.0kb upstream 1.0kb upstream 3382 true Chr5: 3669193-3672574 Arabidopsis thaliana
AT5G11480 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3671575-3672574 Arabidopsis thaliana
AT5G11480 1.0kb downstream 1.0kb downstream 3382 true Chr5: 3668193-3671574 Arabidopsis thaliana
AT5G11480 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3668193-3669192 Arabidopsis thaliana
AT5G11480 2.0kb upstream 2.0kb upstream 4382 true Chr5: 3669193-3673574 Arabidopsis thaliana
AT5G11480 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3671575-3673574 Arabidopsis thaliana
AT5G11480 2.0kb downstream 2.0kb downstream 4382 true Chr5: 3667193-3671574 Arabidopsis thaliana
AT5G11480 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3667193-3669192 Arabidopsis thaliana
AT5G11480 5.0kb upstream 5.0kb upstream 7382 true Chr5: 3669193-3676574 Arabidopsis thaliana
AT5G11480 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3671575-3676574 Arabidopsis thaliana
AT5G11480 5.0kb downstream 5.0kb downstream 7382 true Chr5: 3664193-3671574 Arabidopsis thaliana
AT5G11480 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3664193-3669192 Arabidopsis thaliana
AT5G11480 10.0kb upstream 10.0kb upstream 12382 true Chr5: 3669193-3681574 Arabidopsis thaliana
AT5G11480 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3671575-3681574 Arabidopsis thaliana
AT5G11480 10.0kb downstream 10.0kb downstream 12382 true Chr5: 3659193-3671574 Arabidopsis thaliana
AT5G11480 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3659193-3669192 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368055 5261 Brassicaceae View MSA
123835900 5264 Brassicales-Malvales View MSA
124344389 5266 SBM View MSA
124238593 5268 Malvidae View MSA
124074184 5270 Rosid View MSA
123739065 5271 Pentapetalae View MSA
122788793 5272 Eudicot View MSA
122045956 5273 Angiosperm View MSA
121345764 5274 Embryophyte View MSA
123427955 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.08     High  
cufflinks 5.708        
cufflinks 30.855     High  
cufflinks 6.166        
cufflinks 27.834     High  
cufflinks 5.474        

0 Strain