Gene : AT5G11350 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12121//PTHR12121:SF48 - CARBON CATABOLITE REPRESSOR PROTEIN 4 // CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 Genomic Order:  1058
Name:  ? AT5G11350 Secondary Identifier:  ? PAC:19672142
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G11350 0.5kb upstream 0.5kb upstream 4585 true Chr5: 3621061-3625645 Arabidopsis thaliana
AT5G11350 0.5kb upstream 0.5kb upstream 500 false Chr5: 3621061-3621560 Arabidopsis thaliana
AT5G11350 0.5kb downstream 0.5kb downstream 4585 true Chr5: 3621561-3626145 Arabidopsis thaliana
AT5G11350 0.5kb downstream 0.5kb downstream 500 false Chr5: 3625646-3626145 Arabidopsis thaliana
AT5G11350 1.0kb upstream 1.0kb upstream 5085 true Chr5: 3620561-3625645 Arabidopsis thaliana
AT5G11350 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3620561-3621560 Arabidopsis thaliana
AT5G11350 1.0kb downstream 1.0kb downstream 5085 true Chr5: 3621561-3626645 Arabidopsis thaliana
AT5G11350 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3625646-3626645 Arabidopsis thaliana
AT5G11350 2.0kb upstream 2.0kb upstream 6085 true Chr5: 3619561-3625645 Arabidopsis thaliana
AT5G11350 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3619561-3621560 Arabidopsis thaliana
AT5G11350 2.0kb downstream 2.0kb downstream 6085 true Chr5: 3621561-3627645 Arabidopsis thaliana
AT5G11350 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3625646-3627645 Arabidopsis thaliana
AT5G11350 5.0kb upstream 5.0kb upstream 9085 true Chr5: 3616561-3625645 Arabidopsis thaliana
AT5G11350 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3616561-3621560 Arabidopsis thaliana
AT5G11350 5.0kb downstream 5.0kb downstream 9085 true Chr5: 3621561-3630645 Arabidopsis thaliana
AT5G11350 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3625646-3630645 Arabidopsis thaliana
AT5G11350 10.0kb upstream 10.0kb upstream 14085 true Chr5: 3611561-3625645 Arabidopsis thaliana
AT5G11350 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3611561-3621560 Arabidopsis thaliana
AT5G11350 10.0kb downstream 10.0kb downstream 14085 true Chr5: 3621561-3635645 Arabidopsis thaliana
AT5G11350 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3625646-3635645 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367869 5261 Brassicaceae View MSA
123836418 5264 Brassicales-Malvales View MSA
124338753 5266 SBM View MSA
124242719 5268 Malvidae View MSA
124066048 5270 Rosid View MSA
123737672 5271 Pentapetalae View MSA
122788229 5272 Eudicot View MSA
122041541 5273 Angiosperm View MSA
121350616 5274 Embryophyte View MSA
123428031 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.795        
cufflinks 6.584        
cufflinks 4.191       Low
cufflinks 6.742       High
cufflinks 4.517        
cufflinks 6.294        

0 Strain