Gene : CM2 A. thaliana TAIR10
Primary Identifier:  ? AT5G10870 Defline:  (1 of 1) PTHR21145//PTHR21145:SF1 - CHORISMATE MUTASE // CHORISMATE MUTASE 2
Genomic Order:  1009 Name:  ? AT5G10870
Secondary Identifier:  ? PAC:19667448
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3461 Arabidopsis thaliana pathologic  
Athaliana PWY-3462 Arabidopsis thaliana pathologic  
Athaliana PWY-3481 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G10870 0.5kb upstream 0.5kb upstream 2417 true Chr5: 3430546-3432962 Arabidopsis thaliana
AT5G10870 0.5kb upstream 0.5kb upstream 500 false Chr5: 3432463-3432962 Arabidopsis thaliana
AT5G10870 0.5kb downstream 0.5kb downstream 2417 true Chr5: 3430046-3432462 Arabidopsis thaliana
AT5G10870 0.5kb downstream 0.5kb downstream 500 false Chr5: 3430046-3430545 Arabidopsis thaliana
AT5G10870 1.0kb upstream 1.0kb upstream 2917 true Chr5: 3430546-3433462 Arabidopsis thaliana
AT5G10870 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3432463-3433462 Arabidopsis thaliana
AT5G10870 1.0kb downstream 1.0kb downstream 2917 true Chr5: 3429546-3432462 Arabidopsis thaliana
AT5G10870 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3429546-3430545 Arabidopsis thaliana
AT5G10870 2.0kb upstream 2.0kb upstream 3917 true Chr5: 3430546-3434462 Arabidopsis thaliana
AT5G10870 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3432463-3434462 Arabidopsis thaliana
AT5G10870 2.0kb downstream 2.0kb downstream 3917 true Chr5: 3428546-3432462 Arabidopsis thaliana
AT5G10870 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3428546-3430545 Arabidopsis thaliana
AT5G10870 5.0kb upstream 5.0kb upstream 6917 true Chr5: 3430546-3437462 Arabidopsis thaliana
AT5G10870 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3432463-3437462 Arabidopsis thaliana
AT5G10870 5.0kb downstream 5.0kb downstream 6917 true Chr5: 3425546-3432462 Arabidopsis thaliana
AT5G10870 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3425546-3430545 Arabidopsis thaliana
AT5G10870 10.0kb upstream 10.0kb upstream 11917 true Chr5: 3430546-3442462 Arabidopsis thaliana
AT5G10870 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3432463-3442462 Arabidopsis thaliana
AT5G10870 10.0kb downstream 10.0kb downstream 11917 true Chr5: 3420546-3432462 Arabidopsis thaliana
AT5G10870 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3420546-3430545 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365997 5261 Brassicaceae View MSA
123835007 5264 Brassicales-Malvales View MSA
124338638 5266 SBM View MSA
124239132 5268 Malvidae View MSA
124062994 5270 Rosid View MSA
123742772 5271 Pentapetalae View MSA
122797161 5272 Eudicot View MSA
122050627 5273 Angiosperm View MSA
121312036 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.25        
cufflinks 6.711        
cufflinks 4.928       Low
cufflinks 6.841       High
cufflinks 5.401        
cufflinks 6.537        

0 Strain