Gene : AT5G10540 A. thaliana TAIR10
Defline:  (1 of 2) 3.4.24.70 - Oligopeptidase A Genomic Order:  975
Name:  ? AT5G10540 Secondary Identifier:  ? PAC:19669625
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G10540 0.5kb upstream 0.5kb upstream 7407 true Chr5: 3327565-3334971 Arabidopsis thaliana
AT5G10540 0.5kb upstream 0.5kb upstream 500 false Chr5: 3327565-3328064 Arabidopsis thaliana
AT5G10540 0.5kb downstream 0.5kb downstream 7407 true Chr5: 3328065-3335471 Arabidopsis thaliana
AT5G10540 0.5kb downstream 0.5kb downstream 500 false Chr5: 3334972-3335471 Arabidopsis thaliana
AT5G10540 1.0kb upstream 1.0kb upstream 7907 true Chr5: 3327065-3334971 Arabidopsis thaliana
AT5G10540 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3327065-3328064 Arabidopsis thaliana
AT5G10540 1.0kb downstream 1.0kb downstream 7907 true Chr5: 3328065-3335971 Arabidopsis thaliana
AT5G10540 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3334972-3335971 Arabidopsis thaliana
AT5G10540 2.0kb upstream 2.0kb upstream 8907 true Chr5: 3326065-3334971 Arabidopsis thaliana
AT5G10540 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3326065-3328064 Arabidopsis thaliana
AT5G10540 2.0kb downstream 2.0kb downstream 8907 true Chr5: 3328065-3336971 Arabidopsis thaliana
AT5G10540 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3334972-3336971 Arabidopsis thaliana
AT5G10540 5.0kb upstream 5.0kb upstream 11907 true Chr5: 3323065-3334971 Arabidopsis thaliana
AT5G10540 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3323065-3328064 Arabidopsis thaliana
AT5G10540 5.0kb downstream 5.0kb downstream 11907 true Chr5: 3328065-3339971 Arabidopsis thaliana
AT5G10540 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3334972-3339971 Arabidopsis thaliana
AT5G10540 10.0kb upstream 10.0kb upstream 16907 true Chr5: 3318065-3334971 Arabidopsis thaliana
AT5G10540 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3318065-3328064 Arabidopsis thaliana
AT5G10540 10.0kb downstream 10.0kb downstream 16907 true Chr5: 3328065-3344971 Arabidopsis thaliana
AT5G10540 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3334972-3344971 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363234 5261 Brassicaceae View MSA
123838261 5264 Brassicales-Malvales View MSA
124338453 5266 SBM View MSA
124248514 5268 Malvidae View MSA
124074910 5270 Rosid View MSA
123737764 5271 Pentapetalae View MSA
122786245 5272 Eudicot View MSA
122050294 5273 Angiosperm View MSA
121346045 5274 Embryophyte View MSA
123424293 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.919       Low
cufflinks 17.357        
cufflinks 14.351        
cufflinks 18.351        
cufflinks 13.573        
cufflinks 17.654        

0 Strain