Gene : AT5G10620 A. thaliana TAIR10
Defline:  (1 of 1) 2.1.1.177 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase / rRNA large subunit methyltransferase H Genomic Order:  984
Name:  ? AT5G10620 Secondary Identifier:  ? PAC:19670430
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G10620 0.5kb upstream 0.5kb upstream 1796 true Chr5: 3355320-3357115 Arabidopsis thaliana
AT5G10620 0.5kb upstream 0.5kb upstream 500 false Chr5: 3356616-3357115 Arabidopsis thaliana
AT5G10620 0.5kb downstream 0.5kb downstream 1796 true Chr5: 3354820-3356615 Arabidopsis thaliana
AT5G10620 0.5kb downstream 0.5kb downstream 500 false Chr5: 3354820-3355319 Arabidopsis thaliana
AT5G10620 1.0kb upstream 1.0kb upstream 2296 true Chr5: 3355320-3357615 Arabidopsis thaliana
AT5G10620 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3356616-3357615 Arabidopsis thaliana
AT5G10620 1.0kb downstream 1.0kb downstream 2296 true Chr5: 3354320-3356615 Arabidopsis thaliana
AT5G10620 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3354320-3355319 Arabidopsis thaliana
AT5G10620 2.0kb upstream 2.0kb upstream 3296 true Chr5: 3355320-3358615 Arabidopsis thaliana
AT5G10620 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3356616-3358615 Arabidopsis thaliana
AT5G10620 2.0kb downstream 2.0kb downstream 3296 true Chr5: 3353320-3356615 Arabidopsis thaliana
AT5G10620 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3353320-3355319 Arabidopsis thaliana
AT5G10620 5.0kb upstream 5.0kb upstream 6296 true Chr5: 3355320-3361615 Arabidopsis thaliana
AT5G10620 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3356616-3361615 Arabidopsis thaliana
AT5G10620 5.0kb downstream 5.0kb downstream 6296 true Chr5: 3350320-3356615 Arabidopsis thaliana
AT5G10620 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3350320-3355319 Arabidopsis thaliana
AT5G10620 10.0kb upstream 10.0kb upstream 11296 true Chr5: 3355320-3366615 Arabidopsis thaliana
AT5G10620 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3356616-3366615 Arabidopsis thaliana
AT5G10620 10.0kb downstream 10.0kb downstream 11296 true Chr5: 3345320-3356615 Arabidopsis thaliana
AT5G10620 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3345320-3355319 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041237 5273 Angiosperm View MSA
122371488 5261 Brassicaceae View MSA
123831727 5264 Brassicales-Malvales View MSA
124340896 5266 SBM View MSA
124241004 5268 Malvidae View MSA
124065291 5270 Rosid View MSA
123737666 5271 Pentapetalae View MSA
122786404 5272 Eudicot View MSA
121344768 5274 Embryophyte View MSA
123424832 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.189        
cufflinks 3.05        
cufflinks 5.276       High
cufflinks 2.396       Low
cufflinks 3.897        
cufflinks 2.822        

0 Strain