Gene : AT5G13970 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13445:SF3 - PROTEIN TSSC4 Genomic Order:  1292
Name:  ? AT5G13970 Secondary Identifier:  ? PAC:19666394
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13970 0.5kb upstream 0.5kb upstream 2111 true Chr5: 4506232-4508342 Arabidopsis thaliana
AT5G13970 0.5kb upstream 0.5kb upstream 500 false Chr5: 4507843-4508342 Arabidopsis thaliana
AT5G13970 0.5kb downstream 0.5kb downstream 2111 true Chr5: 4505732-4507842 Arabidopsis thaliana
AT5G13970 0.5kb downstream 0.5kb downstream 500 false Chr5: 4505732-4506231 Arabidopsis thaliana
AT5G13970 1.0kb upstream 1.0kb upstream 2611 true Chr5: 4506232-4508842 Arabidopsis thaliana
AT5G13970 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4507843-4508842 Arabidopsis thaliana
AT5G13970 1.0kb downstream 1.0kb downstream 2611 true Chr5: 4505232-4507842 Arabidopsis thaliana
AT5G13970 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4505232-4506231 Arabidopsis thaliana
AT5G13970 2.0kb upstream 2.0kb upstream 3611 true Chr5: 4506232-4509842 Arabidopsis thaliana
AT5G13970 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4507843-4509842 Arabidopsis thaliana
AT5G13970 2.0kb downstream 2.0kb downstream 3611 true Chr5: 4504232-4507842 Arabidopsis thaliana
AT5G13970 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4504232-4506231 Arabidopsis thaliana
AT5G13970 5.0kb upstream 5.0kb upstream 6611 true Chr5: 4506232-4512842 Arabidopsis thaliana
AT5G13970 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4507843-4512842 Arabidopsis thaliana
AT5G13970 5.0kb downstream 5.0kb downstream 6611 true Chr5: 4501232-4507842 Arabidopsis thaliana
AT5G13970 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4501232-4506231 Arabidopsis thaliana
AT5G13970 10.0kb upstream 10.0kb upstream 11611 true Chr5: 4506232-4517842 Arabidopsis thaliana
AT5G13970 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4507843-4517842 Arabidopsis thaliana
AT5G13970 10.0kb downstream 10.0kb downstream 11611 true Chr5: 4496232-4507842 Arabidopsis thaliana
AT5G13970 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4496232-4506231 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041303 5273 Angiosperm View MSA
122369444 5261 Brassicaceae View MSA
123834279 5264 Brassicales-Malvales View MSA
124343906 5266 SBM View MSA
124239851 5268 Malvidae View MSA
124068037 5270 Rosid View MSA
123741101 5271 Pentapetalae View MSA
122794619 5272 Eudicot View MSA
121348542 5274 Embryophyte View MSA
123426495 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.98        
cufflinks 11.861        
cufflinks 9.076        
cufflinks 13.124       High
cufflinks 8.338       Low
cufflinks 11.881        

0 Strain