Gene : TT4 A. thaliana TAIR10
Primary Identifier:  ? AT5G13930 Defline:  (1 of 1) 2.3.1.74 - Naringenin-chalcone synthase / Flavonone synthase
Genomic Order:  1288 Name:  ? AT5G13930
Secondary Identifier:  ? PAC:19669893
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY1F-FLAVSYN Arabidopsis thaliana pathologic  
Athaliana PWY-6787 Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13930 0.5kb upstream 0.5kb upstream 2077 true Chr5: 4488188-4490264 Arabidopsis thaliana
AT5G13930 0.5kb upstream 0.5kb upstream 500 false Chr5: 4488188-4488687 Arabidopsis thaliana
AT5G13930 0.5kb downstream 0.5kb downstream 2077 true Chr5: 4488688-4490764 Arabidopsis thaliana
AT5G13930 0.5kb downstream 0.5kb downstream 500 false Chr5: 4490265-4490764 Arabidopsis thaliana
AT5G13930 1.0kb upstream 1.0kb upstream 2577 true Chr5: 4487688-4490264 Arabidopsis thaliana
AT5G13930 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4487688-4488687 Arabidopsis thaliana
AT5G13930 1.0kb downstream 1.0kb downstream 2577 true Chr5: 4488688-4491264 Arabidopsis thaliana
AT5G13930 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4490265-4491264 Arabidopsis thaliana
AT5G13930 2.0kb upstream 2.0kb upstream 3577 true Chr5: 4486688-4490264 Arabidopsis thaliana
AT5G13930 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4486688-4488687 Arabidopsis thaliana
AT5G13930 2.0kb downstream 2.0kb downstream 3577 true Chr5: 4488688-4492264 Arabidopsis thaliana
AT5G13930 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4490265-4492264 Arabidopsis thaliana
AT5G13930 5.0kb upstream 5.0kb upstream 6577 true Chr5: 4483688-4490264 Arabidopsis thaliana
AT5G13930 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4483688-4488687 Arabidopsis thaliana
AT5G13930 5.0kb downstream 5.0kb downstream 6577 true Chr5: 4488688-4495264 Arabidopsis thaliana
AT5G13930 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4490265-4495264 Arabidopsis thaliana
AT5G13930 10.0kb upstream 10.0kb upstream 11577 true Chr5: 4478688-4490264 Arabidopsis thaliana
AT5G13930 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4478688-4488687 Arabidopsis thaliana
AT5G13930 10.0kb downstream 10.0kb downstream 11577 true Chr5: 4488688-4500264 Arabidopsis thaliana
AT5G13930 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4490265-4500264 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377529 5261 Brassicaceae View MSA
123840388 5264 Brassicales-Malvales View MSA
124351590 5266 SBM View MSA
124254080 5268 Malvidae View MSA
124069836 5270 Rosid View MSA
123744406 5271 Pentapetalae View MSA
122790395 5272 Eudicot View MSA
122051180 5273 Angiosperm View MSA
121350627 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 51.747     High High
cufflinks 0.659       Low
cufflinks 25.22        
cufflinks 6.067        
cufflinks 33.294     High  
cufflinks 0.744       Low

0 Strain