Gene : AGL15 A. thaliana TAIR10
Primary Identifier:  ? AT5G13790 Defline:  (1 of 1) PTHR11945//PTHR11945:SF237 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED
Genomic Order:  1272 Name:  ? AT5G13790
Secondary Identifier:  ? PAC:19669343
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13790 0.5kb upstream 0.5kb upstream 2330 true Chr5: 4449014-4451343 Arabidopsis thaliana
AT5G13790 0.5kb upstream 0.5kb upstream 500 false Chr5: 4450844-4451343 Arabidopsis thaliana
AT5G13790 0.5kb downstream 0.5kb downstream 2330 true Chr5: 4448514-4450843 Arabidopsis thaliana
AT5G13790 0.5kb downstream 0.5kb downstream 500 false Chr5: 4448514-4449013 Arabidopsis thaliana
AT5G13790 1.0kb upstream 1.0kb upstream 2830 true Chr5: 4449014-4451843 Arabidopsis thaliana
AT5G13790 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4450844-4451843 Arabidopsis thaliana
AT5G13790 1.0kb downstream 1.0kb downstream 2830 true Chr5: 4448014-4450843 Arabidopsis thaliana
AT5G13790 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4448014-4449013 Arabidopsis thaliana
AT5G13790 2.0kb upstream 2.0kb upstream 3830 true Chr5: 4449014-4452843 Arabidopsis thaliana
AT5G13790 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4450844-4452843 Arabidopsis thaliana
AT5G13790 2.0kb downstream 2.0kb downstream 3830 true Chr5: 4447014-4450843 Arabidopsis thaliana
AT5G13790 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4447014-4449013 Arabidopsis thaliana
AT5G13790 5.0kb upstream 5.0kb upstream 6830 true Chr5: 4449014-4455843 Arabidopsis thaliana
AT5G13790 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4450844-4455843 Arabidopsis thaliana
AT5G13790 5.0kb downstream 5.0kb downstream 6830 true Chr5: 4444014-4450843 Arabidopsis thaliana
AT5G13790 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4444014-4449013 Arabidopsis thaliana
AT5G13790 10.0kb upstream 10.0kb upstream 11830 true Chr5: 4449014-4460843 Arabidopsis thaliana
AT5G13790 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4450844-4460843 Arabidopsis thaliana
AT5G13790 10.0kb downstream 10.0kb downstream 11830 true Chr5: 4439014-4450843 Arabidopsis thaliana
AT5G13790 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4439014-4449013 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372629 5261 Brassicaceae View MSA
123835944 5264 Brassicales-Malvales View MSA
124341091 5266 SBM View MSA
124248714 5268 Malvidae View MSA
124074630 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.341        
cufflinks 0.835       High
cufflinks 0.164     Low  
cufflinks 0.576        
cufflinks 0.092     Low Low
cufflinks 0.528        

0 Strain