Gene : AT5G13660 A. thaliana TAIR10
Defline:  (1 of 18) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  1259
Name:  ? AT5G13660 Secondary Identifier:  ? PAC:19670231
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13660 0.5kb upstream 0.5kb upstream 3072 true Chr5: 4404104-4407175 Arabidopsis thaliana
AT5G13660 0.5kb upstream 0.5kb upstream 500 false Chr5: 4404104-4404603 Arabidopsis thaliana
AT5G13660 0.5kb downstream 0.5kb downstream 3072 true Chr5: 4404604-4407675 Arabidopsis thaliana
AT5G13660 0.5kb downstream 0.5kb downstream 500 false Chr5: 4407176-4407675 Arabidopsis thaliana
AT5G13660 1.0kb upstream 1.0kb upstream 3572 true Chr5: 4403604-4407175 Arabidopsis thaliana
AT5G13660 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4403604-4404603 Arabidopsis thaliana
AT5G13660 1.0kb downstream 1.0kb downstream 3572 true Chr5: 4404604-4408175 Arabidopsis thaliana
AT5G13660 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4407176-4408175 Arabidopsis thaliana
AT5G13660 2.0kb upstream 2.0kb upstream 4572 true Chr5: 4402604-4407175 Arabidopsis thaliana
AT5G13660 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4402604-4404603 Arabidopsis thaliana
AT5G13660 2.0kb downstream 2.0kb downstream 4572 true Chr5: 4404604-4409175 Arabidopsis thaliana
AT5G13660 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4407176-4409175 Arabidopsis thaliana
AT5G13660 5.0kb upstream 5.0kb upstream 7572 true Chr5: 4399604-4407175 Arabidopsis thaliana
AT5G13660 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4399604-4404603 Arabidopsis thaliana
AT5G13660 5.0kb downstream 5.0kb downstream 7572 true Chr5: 4404604-4412175 Arabidopsis thaliana
AT5G13660 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4407176-4412175 Arabidopsis thaliana
AT5G13660 10.0kb upstream 10.0kb upstream 12572 true Chr5: 4394604-4407175 Arabidopsis thaliana
AT5G13660 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4394604-4404603 Arabidopsis thaliana
AT5G13660 10.0kb downstream 10.0kb downstream 12572 true Chr5: 4404604-4417175 Arabidopsis thaliana
AT5G13660 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4407176-4417175 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363746 5261 Brassicaceae View MSA
123838256 5264 Brassicales-Malvales View MSA
124351593 5266 SBM View MSA
124244073 5268 Malvidae View MSA
124072132 5270 Rosid View MSA
123747463 5271 Pentapetalae View MSA
122794643 5272 Eudicot View MSA
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.499       Low
cufflinks 5.784       High
cufflinks 2.724        
cufflinks 4.985        
cufflinks 2.987        
cufflinks 4.912        

0 Strain