Gene : AT5G13420 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10683//PTHR10683:SF6 - TRANSALDOLASE // TRANSALDOLASE-RELATED Genomic Order:  1236
Name:  ? AT5G13420 Secondary Identifier:  ? PAC:19671471
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana NONOXIPENT-PWY Arabidopsis thaliana pathologic  
Athaliana PENTOSE-P-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5723 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13420 0.5kb upstream 0.5kb upstream 3021 true Chr5: 4301792-4304812 Arabidopsis thaliana
AT5G13420 0.5kb upstream 0.5kb upstream 500 false Chr5: 4304313-4304812 Arabidopsis thaliana
AT5G13420 0.5kb downstream 0.5kb downstream 3021 true Chr5: 4301292-4304312 Arabidopsis thaliana
AT5G13420 0.5kb downstream 0.5kb downstream 500 false Chr5: 4301292-4301791 Arabidopsis thaliana
AT5G13420 1.0kb upstream 1.0kb upstream 3521 true Chr5: 4301792-4305312 Arabidopsis thaliana
AT5G13420 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4304313-4305312 Arabidopsis thaliana
AT5G13420 1.0kb downstream 1.0kb downstream 3521 true Chr5: 4300792-4304312 Arabidopsis thaliana
AT5G13420 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4300792-4301791 Arabidopsis thaliana
AT5G13420 2.0kb upstream 2.0kb upstream 4521 true Chr5: 4301792-4306312 Arabidopsis thaliana
AT5G13420 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4304313-4306312 Arabidopsis thaliana
AT5G13420 2.0kb downstream 2.0kb downstream 4521 true Chr5: 4299792-4304312 Arabidopsis thaliana
AT5G13420 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4299792-4301791 Arabidopsis thaliana
AT5G13420 5.0kb upstream 5.0kb upstream 7521 true Chr5: 4301792-4309312 Arabidopsis thaliana
AT5G13420 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4304313-4309312 Arabidopsis thaliana
AT5G13420 5.0kb downstream 5.0kb downstream 7521 true Chr5: 4296792-4304312 Arabidopsis thaliana
AT5G13420 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4296792-4301791 Arabidopsis thaliana
AT5G13420 10.0kb upstream 10.0kb upstream 12521 true Chr5: 4301792-4314312 Arabidopsis thaliana
AT5G13420 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4304313-4314312 Arabidopsis thaliana
AT5G13420 10.0kb downstream 10.0kb downstream 12521 true Chr5: 4291792-4304312 Arabidopsis thaliana
AT5G13420 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4291792-4301791 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373845 5261 Brassicaceae View MSA
123827398 5264 Brassicales-Malvales View MSA
124337524 5266 SBM View MSA
124240084 5268 Malvidae View MSA
124064365 5270 Rosid View MSA
123743559 5271 Pentapetalae View MSA
122786857 5272 Eudicot View MSA
122044911 5273 Angiosperm View MSA
121343866 5274 Embryophyte View MSA
123379934 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.145        
cufflinks 66.685     High  
cufflinks 15.099        
cufflinks 77.975     High  
cufflinks 16.94        
cufflinks 102.677     High High

0 Strain