Gene : AT5G13440 A. thaliana TAIR10
Defline:  (1 of 2) K00411 - ubiquinol-cytochrome c reductase iron-sulfur subunit (UQCRFS1, RIP1, petA) Genomic Order:  1238
Name:  ? AT5G13440 Secondary Identifier:  ? PAC:19668132
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3781 Arabidopsis thaliana pathologic  
Athaliana PWY-7279 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13440 0.5kb upstream 0.5kb upstream 2553 true Chr5: 4308129-4310681 Arabidopsis thaliana
AT5G13440 0.5kb upstream 0.5kb upstream 500 false Chr5: 4310182-4310681 Arabidopsis thaliana
AT5G13440 0.5kb downstream 0.5kb downstream 2553 true Chr5: 4307629-4310181 Arabidopsis thaliana
AT5G13440 0.5kb downstream 0.5kb downstream 500 false Chr5: 4307629-4308128 Arabidopsis thaliana
AT5G13440 1.0kb upstream 1.0kb upstream 3053 true Chr5: 4308129-4311181 Arabidopsis thaliana
AT5G13440 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4310182-4311181 Arabidopsis thaliana
AT5G13440 1.0kb downstream 1.0kb downstream 3053 true Chr5: 4307129-4310181 Arabidopsis thaliana
AT5G13440 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4307129-4308128 Arabidopsis thaliana
AT5G13440 2.0kb upstream 2.0kb upstream 4053 true Chr5: 4308129-4312181 Arabidopsis thaliana
AT5G13440 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4310182-4312181 Arabidopsis thaliana
AT5G13440 2.0kb downstream 2.0kb downstream 4053 true Chr5: 4306129-4310181 Arabidopsis thaliana
AT5G13440 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4306129-4308128 Arabidopsis thaliana
AT5G13440 5.0kb upstream 5.0kb upstream 7053 true Chr5: 4308129-4315181 Arabidopsis thaliana
AT5G13440 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4310182-4315181 Arabidopsis thaliana
AT5G13440 5.0kb downstream 5.0kb downstream 7053 true Chr5: 4303129-4310181 Arabidopsis thaliana
AT5G13440 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4303129-4308128 Arabidopsis thaliana
AT5G13440 10.0kb upstream 10.0kb upstream 12053 true Chr5: 4308129-4320181 Arabidopsis thaliana
AT5G13440 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4310182-4320181 Arabidopsis thaliana
AT5G13440 10.0kb downstream 10.0kb downstream 12053 true Chr5: 4298129-4310181 Arabidopsis thaliana
AT5G13440 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4298129-4308128 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368330 5261 Brassicaceae View MSA
123835137 5264 Brassicales-Malvales View MSA
124347934 5266 SBM View MSA
124250960 5268 Malvidae View MSA
124070196 5270 Rosid View MSA
123743313 5271 Pentapetalae View MSA
122789519 5272 Eudicot View MSA
122049860 5273 Angiosperm View MSA
121345913 5274 Embryophyte View MSA
123424462 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.497     High  
cufflinks 40.401     High Low
cufflinks 45.878     High  
cufflinks 45.551     High  
cufflinks 47.438     High  
cufflinks 43.625     High  

0 Strain