Gene : AT5G13140 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31614//PTHR31614:SF6 - FAMILY NOT NAMED // POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN Genomic Order:  1207
Name:  ? AT5G13140 Secondary Identifier:  ? PAC:19668343
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13140 0.5kb upstream 0.5kb upstream 1735 true Chr5: 4170560-4172294 Arabidopsis thaliana
AT5G13140 0.5kb upstream 0.5kb upstream 500 false Chr5: 4171795-4172294 Arabidopsis thaliana
AT5G13140 0.5kb downstream 0.5kb downstream 1735 true Chr5: 4170060-4171794 Arabidopsis thaliana
AT5G13140 0.5kb downstream 0.5kb downstream 500 false Chr5: 4170060-4170559 Arabidopsis thaliana
AT5G13140 1.0kb upstream 1.0kb upstream 2235 true Chr5: 4170560-4172794 Arabidopsis thaliana
AT5G13140 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4171795-4172794 Arabidopsis thaliana
AT5G13140 1.0kb downstream 1.0kb downstream 2235 true Chr5: 4169560-4171794 Arabidopsis thaliana
AT5G13140 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4169560-4170559 Arabidopsis thaliana
AT5G13140 2.0kb upstream 2.0kb upstream 3235 true Chr5: 4170560-4173794 Arabidopsis thaliana
AT5G13140 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4171795-4173794 Arabidopsis thaliana
AT5G13140 2.0kb downstream 2.0kb downstream 3235 true Chr5: 4168560-4171794 Arabidopsis thaliana
AT5G13140 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4168560-4170559 Arabidopsis thaliana
AT5G13140 5.0kb upstream 5.0kb upstream 6235 true Chr5: 4170560-4176794 Arabidopsis thaliana
AT5G13140 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4171795-4176794 Arabidopsis thaliana
AT5G13140 5.0kb downstream 5.0kb downstream 6235 true Chr5: 4165560-4171794 Arabidopsis thaliana
AT5G13140 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4165560-4170559 Arabidopsis thaliana
AT5G13140 10.0kb upstream 10.0kb upstream 11235 true Chr5: 4170560-4181794 Arabidopsis thaliana
AT5G13140 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4171795-4181794 Arabidopsis thaliana
AT5G13140 10.0kb downstream 10.0kb downstream 11235 true Chr5: 4160560-4171794 Arabidopsis thaliana
AT5G13140 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4160560-4170559 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362103 5261 Brassicaceae View MSA
123798307 5264 Brassicales-Malvales View MSA
124348200 5266 SBM View MSA
124244752 5268 Malvidae View MSA
124071328 5270 Rosid View MSA
123753295 5271 Pentapetalae View MSA
122796596 5272 Eudicot View MSA
122051631 5273 Angiosperm View MSA
121349317 5274 Embryophyte View MSA
123381274 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.279     High  
cufflinks 104.018     High  
cufflinks 41.671     High  
cufflinks 77.378     High  
cufflinks 23.846       Low
cufflinks 118.278     High High

0 Strain