Gene : 5-FCL A. thaliana TAIR10
Primary Identifier:  ? AT5G13050 Defline:  (1 of 1) PTHR23407:SF1 - 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
Genomic Order:  1198 Name:  ? AT5G13050
Secondary Identifier:  ? PAC:19667852
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3841 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13050 0.5kb upstream 0.5kb upstream 2737 true Chr5: 4136556-4139292 Arabidopsis thaliana
AT5G13050 0.5kb upstream 0.5kb upstream 500 false Chr5: 4138793-4139292 Arabidopsis thaliana
AT5G13050 0.5kb downstream 0.5kb downstream 2737 true Chr5: 4136056-4138792 Arabidopsis thaliana
AT5G13050 0.5kb downstream 0.5kb downstream 500 false Chr5: 4136056-4136555 Arabidopsis thaliana
AT5G13050 1.0kb upstream 1.0kb upstream 3237 true Chr5: 4136556-4139792 Arabidopsis thaliana
AT5G13050 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4138793-4139792 Arabidopsis thaliana
AT5G13050 1.0kb downstream 1.0kb downstream 3237 true Chr5: 4135556-4138792 Arabidopsis thaliana
AT5G13050 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4135556-4136555 Arabidopsis thaliana
AT5G13050 2.0kb upstream 2.0kb upstream 4237 true Chr5: 4136556-4140792 Arabidopsis thaliana
AT5G13050 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4138793-4140792 Arabidopsis thaliana
AT5G13050 2.0kb downstream 2.0kb downstream 4237 true Chr5: 4134556-4138792 Arabidopsis thaliana
AT5G13050 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4134556-4136555 Arabidopsis thaliana
AT5G13050 5.0kb upstream 5.0kb upstream 7237 true Chr5: 4136556-4143792 Arabidopsis thaliana
AT5G13050 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4138793-4143792 Arabidopsis thaliana
AT5G13050 5.0kb downstream 5.0kb downstream 7237 true Chr5: 4131556-4138792 Arabidopsis thaliana
AT5G13050 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4131556-4136555 Arabidopsis thaliana
AT5G13050 10.0kb upstream 10.0kb upstream 12237 true Chr5: 4136556-4148792 Arabidopsis thaliana
AT5G13050 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4138793-4148792 Arabidopsis thaliana
AT5G13050 10.0kb downstream 10.0kb downstream 12237 true Chr5: 4126556-4138792 Arabidopsis thaliana
AT5G13050 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4126556-4136555 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041034 5273 Angiosperm View MSA
122379740 5261 Brassicaceae View MSA
123835860 5264 Brassicales-Malvales View MSA
124349517 5266 SBM View MSA
124246872 5268 Malvidae View MSA
124060507 5270 Rosid View MSA
123750943 5271 Pentapetalae View MSA
122792422 5272 Eudicot View MSA
121347096 5274 Embryophyte View MSA
123424141 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.608        
cufflinks 5.413        
cufflinks 3.9        
cufflinks 5.103        
cufflinks 3.429       Low
cufflinks 5.928       High

0 Strain