Gene : AT5G13020 A. thaliana TAIR10
Defline:  (1 of 1) PTHR33432:SF3 - EMSY N TERMINUS AND PLANT TUDOR-LIKE DOMAIN-CONTAINING PROTEIN Genomic Order:  1196
Name:  ? AT5G13020 Secondary Identifier:  ? PAC:19667781
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13020 0.5kb upstream 0.5kb upstream 4006 true Chr5: 4129359-4133364 Arabidopsis thaliana
AT5G13020 0.5kb upstream 0.5kb upstream 500 false Chr5: 4132865-4133364 Arabidopsis thaliana
AT5G13020 0.5kb downstream 0.5kb downstream 4006 true Chr5: 4128859-4132864 Arabidopsis thaliana
AT5G13020 0.5kb downstream 0.5kb downstream 500 false Chr5: 4128859-4129358 Arabidopsis thaliana
AT5G13020 1.0kb upstream 1.0kb upstream 4506 true Chr5: 4129359-4133864 Arabidopsis thaliana
AT5G13020 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4132865-4133864 Arabidopsis thaliana
AT5G13020 1.0kb downstream 1.0kb downstream 4506 true Chr5: 4128359-4132864 Arabidopsis thaliana
AT5G13020 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4128359-4129358 Arabidopsis thaliana
AT5G13020 2.0kb upstream 2.0kb upstream 5506 true Chr5: 4129359-4134864 Arabidopsis thaliana
AT5G13020 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4132865-4134864 Arabidopsis thaliana
AT5G13020 2.0kb downstream 2.0kb downstream 5506 true Chr5: 4127359-4132864 Arabidopsis thaliana
AT5G13020 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4127359-4129358 Arabidopsis thaliana
AT5G13020 5.0kb upstream 5.0kb upstream 8506 true Chr5: 4129359-4137864 Arabidopsis thaliana
AT5G13020 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4132865-4137864 Arabidopsis thaliana
AT5G13020 5.0kb downstream 5.0kb downstream 8506 true Chr5: 4124359-4132864 Arabidopsis thaliana
AT5G13020 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4124359-4129358 Arabidopsis thaliana
AT5G13020 10.0kb upstream 10.0kb upstream 13506 true Chr5: 4129359-4142864 Arabidopsis thaliana
AT5G13020 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4132865-4142864 Arabidopsis thaliana
AT5G13020 10.0kb downstream 10.0kb downstream 13506 true Chr5: 4119359-4132864 Arabidopsis thaliana
AT5G13020 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4119359-4129358 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363597 5261 Brassicaceae View MSA
123831865 5264 Brassicales-Malvales View MSA
124350337 5266 SBM View MSA
124242542 5268 Malvidae View MSA
124070696 5270 Rosid View MSA
123751368 5271 Pentapetalae View MSA
122797333 5272 Eudicot View MSA
122041538 5273 Angiosperm View MSA
121351011 5274 Embryophyte View MSA
123428685 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.808        
cufflinks 20.779        
cufflinks 20.608       Low
cufflinks 23.113        
cufflinks 23.421       High
cufflinks 21.146        

0 Strain