Gene : AT5G13090 A. thaliana TAIR10
Genomic Order:  1202 Name:  ? AT5G13090
Secondary Identifier:  ? PAC:19666778
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13090 0.5kb upstream 0.5kb upstream 1588 true Chr5: 4153585-4155172 Arabidopsis thaliana
AT5G13090 0.5kb upstream 0.5kb upstream 500 false Chr5: 4154673-4155172 Arabidopsis thaliana
AT5G13090 0.5kb downstream 0.5kb downstream 1588 true Chr5: 4153085-4154672 Arabidopsis thaliana
AT5G13090 0.5kb downstream 0.5kb downstream 500 false Chr5: 4153085-4153584 Arabidopsis thaliana
AT5G13090 1.0kb upstream 1.0kb upstream 2088 true Chr5: 4153585-4155672 Arabidopsis thaliana
AT5G13090 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4154673-4155672 Arabidopsis thaliana
AT5G13090 1.0kb downstream 1.0kb downstream 2088 true Chr5: 4152585-4154672 Arabidopsis thaliana
AT5G13090 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4152585-4153584 Arabidopsis thaliana
AT5G13090 2.0kb upstream 2.0kb upstream 3088 true Chr5: 4153585-4156672 Arabidopsis thaliana
AT5G13090 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4154673-4156672 Arabidopsis thaliana
AT5G13090 2.0kb downstream 2.0kb downstream 3088 true Chr5: 4151585-4154672 Arabidopsis thaliana
AT5G13090 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4151585-4153584 Arabidopsis thaliana
AT5G13090 5.0kb upstream 5.0kb upstream 6088 true Chr5: 4153585-4159672 Arabidopsis thaliana
AT5G13090 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4154673-4159672 Arabidopsis thaliana
AT5G13090 5.0kb downstream 5.0kb downstream 6088 true Chr5: 4148585-4154672 Arabidopsis thaliana
AT5G13090 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4148585-4153584 Arabidopsis thaliana
AT5G13090 10.0kb upstream 10.0kb upstream 11088 true Chr5: 4153585-4164672 Arabidopsis thaliana
AT5G13090 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4154673-4164672 Arabidopsis thaliana
AT5G13090 10.0kb downstream 10.0kb downstream 11088 true Chr5: 4143585-4154672 Arabidopsis thaliana
AT5G13090 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4143585-4153584 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373804 5261 Brassicaceae View MSA
123838949 5264 Brassicales-Malvales View MSA
124340018 5266 SBM View MSA
124239000 5268 Malvidae View MSA
124065754 5270 Rosid View MSA
123751715 5271 Pentapetalae View MSA
122793520 5272 Eudicot View MSA
122049689 5273 Angiosperm View MSA
121311543 5274 Embryophyte View MSA
123348826 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.576       Low
cufflinks 36.824     High  
cufflinks 17.646        
cufflinks 38.833     High High
cufflinks 16.521        
cufflinks 28.659        

0 Strain