Gene : AT5G12980 A. thaliana TAIR10
Defline:  (1 of 3) K12606 - CCR4-NOT transcription complex subunit 9 (RCD1, CNOT9, CAF40) Genomic Order:  1192
Name:  ? AT5G12980 Secondary Identifier:  ? PAC:19667474
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G12980 0.5kb upstream 0.5kb upstream 3302 true Chr5: 4105383-4108684 Arabidopsis thaliana
AT5G12980 0.5kb upstream 0.5kb upstream 500 false Chr5: 4108185-4108684 Arabidopsis thaliana
AT5G12980 0.5kb downstream 0.5kb downstream 3302 true Chr5: 4104883-4108184 Arabidopsis thaliana
AT5G12980 0.5kb downstream 0.5kb downstream 500 false Chr5: 4104883-4105382 Arabidopsis thaliana
AT5G12980 1.0kb upstream 1.0kb upstream 3802 true Chr5: 4105383-4109184 Arabidopsis thaliana
AT5G12980 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4108185-4109184 Arabidopsis thaliana
AT5G12980 1.0kb downstream 1.0kb downstream 3802 true Chr5: 4104383-4108184 Arabidopsis thaliana
AT5G12980 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4104383-4105382 Arabidopsis thaliana
AT5G12980 2.0kb upstream 2.0kb upstream 4802 true Chr5: 4105383-4110184 Arabidopsis thaliana
AT5G12980 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4108185-4110184 Arabidopsis thaliana
AT5G12980 2.0kb downstream 2.0kb downstream 4802 true Chr5: 4103383-4108184 Arabidopsis thaliana
AT5G12980 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4103383-4105382 Arabidopsis thaliana
AT5G12980 5.0kb upstream 5.0kb upstream 7802 true Chr5: 4105383-4113184 Arabidopsis thaliana
AT5G12980 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4108185-4113184 Arabidopsis thaliana
AT5G12980 5.0kb downstream 5.0kb downstream 7802 true Chr5: 4100383-4108184 Arabidopsis thaliana
AT5G12980 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4100383-4105382 Arabidopsis thaliana
AT5G12980 10.0kb upstream 10.0kb upstream 12802 true Chr5: 4105383-4118184 Arabidopsis thaliana
AT5G12980 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4108185-4118184 Arabidopsis thaliana
AT5G12980 10.0kb downstream 10.0kb downstream 12802 true Chr5: 4095383-4108184 Arabidopsis thaliana
AT5G12980 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4095383-4105382 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510355 5273 Angiosperm View MSA
122362608 5261 Brassicaceae View MSA
123798392 5264 Brassicales-Malvales View MSA
124296033 5266 SBM View MSA
124148305 5268 Malvidae View MSA
123874326 5270 Rosid View MSA
123458317 5271 Pentapetalae View MSA
122493723 5272 Eudicot View MSA
120783457 5274 Embryophyte View MSA
122825465 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.765        
cufflinks 2.51       Low
cufflinks 3.135        
cufflinks 2.856        
cufflinks 3.15        
cufflinks 3.097        

0 Strain