Gene : AT5G12970 A. thaliana TAIR10
Defline:  (1 of 3) PTHR10024//PTHR10024:SF243 - SYNAPTOTAGMIN // ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE-LIKE PROTEIN Genomic Order:  1191
Name:  ? AT5G12970 Secondary Identifier:  ? PAC:19669801
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G12970 0.5kb upstream 0.5kb upstream 3693 true Chr5: 4101635-4105327 Arabidopsis thaliana
AT5G12970 0.5kb upstream 0.5kb upstream 500 false Chr5: 4101635-4102134 Arabidopsis thaliana
AT5G12970 0.5kb downstream 0.5kb downstream 3693 true Chr5: 4102135-4105827 Arabidopsis thaliana
AT5G12970 0.5kb downstream 0.5kb downstream 500 false Chr5: 4105328-4105827 Arabidopsis thaliana
AT5G12970 1.0kb upstream 1.0kb upstream 4193 true Chr5: 4101135-4105327 Arabidopsis thaliana
AT5G12970 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4101135-4102134 Arabidopsis thaliana
AT5G12970 1.0kb downstream 1.0kb downstream 4193 true Chr5: 4102135-4106327 Arabidopsis thaliana
AT5G12970 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4105328-4106327 Arabidopsis thaliana
AT5G12970 2.0kb upstream 2.0kb upstream 5193 true Chr5: 4100135-4105327 Arabidopsis thaliana
AT5G12970 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4100135-4102134 Arabidopsis thaliana
AT5G12970 2.0kb downstream 2.0kb downstream 5193 true Chr5: 4102135-4107327 Arabidopsis thaliana
AT5G12970 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4105328-4107327 Arabidopsis thaliana
AT5G12970 5.0kb upstream 5.0kb upstream 8193 true Chr5: 4097135-4105327 Arabidopsis thaliana
AT5G12970 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4097135-4102134 Arabidopsis thaliana
AT5G12970 5.0kb downstream 5.0kb downstream 8193 true Chr5: 4102135-4110327 Arabidopsis thaliana
AT5G12970 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4105328-4110327 Arabidopsis thaliana
AT5G12970 10.0kb upstream 10.0kb upstream 13193 true Chr5: 4092135-4105327 Arabidopsis thaliana
AT5G12970 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4092135-4102134 Arabidopsis thaliana
AT5G12970 10.0kb downstream 10.0kb downstream 13193 true Chr5: 4102135-4115327 Arabidopsis thaliana
AT5G12970 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4105328-4115327 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368533 5261 Brassicaceae View MSA
123839886 5264 Brassicales-Malvales View MSA
124340246 5266 SBM View MSA
124251050 5268 Malvidae View MSA
124067885 5270 Rosid View MSA
123751578 5271 Pentapetalae View MSA
122793897 5272 Eudicot View MSA
122046174 5273 Angiosperm View MSA
121350979 5274 Embryophyte View MSA
123427289 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.474        
cufflinks 4.212        
cufflinks 0.34        
cufflinks 5.11        
cufflinks 0.236     Low Low
cufflinks 7.733       High

0 Strain