Gene : CPK7 A. thaliana TAIR10
Primary Identifier:  ? AT5G12480 Defline:  (1 of 2) PTHR24349:SF116 - CALCIUM-DEPENDENT PROTEIN KINASE 7
Genomic Order:  1177 Name:  ? AT5G12480
Secondary Identifier:  ? PAC:19668691
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G12480 0.5kb upstream 0.5kb upstream 3519 true Chr5: 4047515-4051033 Arabidopsis thaliana
AT5G12480 0.5kb upstream 0.5kb upstream 500 false Chr5: 4050534-4051033 Arabidopsis thaliana
AT5G12480 0.5kb downstream 0.5kb downstream 3519 true Chr5: 4047015-4050533 Arabidopsis thaliana
AT5G12480 0.5kb downstream 0.5kb downstream 500 false Chr5: 4047015-4047514 Arabidopsis thaliana
AT5G12480 1.0kb upstream 1.0kb upstream 4019 true Chr5: 4047515-4051533 Arabidopsis thaliana
AT5G12480 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4050534-4051533 Arabidopsis thaliana
AT5G12480 1.0kb downstream 1.0kb downstream 4019 true Chr5: 4046515-4050533 Arabidopsis thaliana
AT5G12480 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4046515-4047514 Arabidopsis thaliana
AT5G12480 2.0kb upstream 2.0kb upstream 5019 true Chr5: 4047515-4052533 Arabidopsis thaliana
AT5G12480 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4050534-4052533 Arabidopsis thaliana
AT5G12480 2.0kb downstream 2.0kb downstream 5019 true Chr5: 4045515-4050533 Arabidopsis thaliana
AT5G12480 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4045515-4047514 Arabidopsis thaliana
AT5G12480 5.0kb upstream 5.0kb upstream 8019 true Chr5: 4047515-4055533 Arabidopsis thaliana
AT5G12480 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4050534-4055533 Arabidopsis thaliana
AT5G12480 5.0kb downstream 5.0kb downstream 8019 true Chr5: 4042515-4050533 Arabidopsis thaliana
AT5G12480 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4042515-4047514 Arabidopsis thaliana
AT5G12480 10.0kb upstream 10.0kb upstream 13019 true Chr5: 4047515-4060533 Arabidopsis thaliana
AT5G12480 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4050534-4060533 Arabidopsis thaliana
AT5G12480 10.0kb downstream 10.0kb downstream 13019 true Chr5: 4037515-4050533 Arabidopsis thaliana
AT5G12480 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4037515-4047514 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360233 5261 Brassicaceae View MSA
123836793 5264 Brassicales-Malvales View MSA
124342314 5266 SBM View MSA
124244480 5268 Malvidae View MSA
124061660 5270 Rosid View MSA
123751372 5271 Pentapetalae View MSA
122791900 5272 Eudicot View MSA
122045931 5273 Angiosperm View MSA
121348324 5274 Embryophyte View MSA
123380819 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.413       High
cufflinks 10.787        
cufflinks 8.817       Low
cufflinks 14.072       High
cufflinks 10.355        
cufflinks 11.018        

0 Strain