Gene : LRP1 A. thaliana TAIR10
Primary Identifier:  ? AT5G12330 Defline:  (1 of 1) PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6
Genomic Order:  1162 Name:  ? AT5G12330
Secondary Identifier:  ? PAC:19669431
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G12330 0.5kb upstream 0.5kb upstream 2959 true Chr5: 3987375-3990333 Arabidopsis thaliana
AT5G12330 0.5kb upstream 0.5kb upstream 500 false Chr5: 3989834-3990333 Arabidopsis thaliana
AT5G12330 0.5kb downstream 0.5kb downstream 2959 true Chr5: 3986875-3989833 Arabidopsis thaliana
AT5G12330 0.5kb downstream 0.5kb downstream 500 false Chr5: 3986875-3987374 Arabidopsis thaliana
AT5G12330 1.0kb upstream 1.0kb upstream 3459 true Chr5: 3987375-3990833 Arabidopsis thaliana
AT5G12330 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3989834-3990833 Arabidopsis thaliana
AT5G12330 1.0kb downstream 1.0kb downstream 3459 true Chr5: 3986375-3989833 Arabidopsis thaliana
AT5G12330 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3986375-3987374 Arabidopsis thaliana
AT5G12330 2.0kb upstream 2.0kb upstream 4459 true Chr5: 3987375-3991833 Arabidopsis thaliana
AT5G12330 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3989834-3991833 Arabidopsis thaliana
AT5G12330 2.0kb downstream 2.0kb downstream 4459 true Chr5: 3985375-3989833 Arabidopsis thaliana
AT5G12330 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3985375-3987374 Arabidopsis thaliana
AT5G12330 5.0kb upstream 5.0kb upstream 7459 true Chr5: 3987375-3994833 Arabidopsis thaliana
AT5G12330 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3989834-3994833 Arabidopsis thaliana
AT5G12330 5.0kb downstream 5.0kb downstream 7459 true Chr5: 3982375-3989833 Arabidopsis thaliana
AT5G12330 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3982375-3987374 Arabidopsis thaliana
AT5G12330 10.0kb upstream 10.0kb upstream 12459 true Chr5: 3987375-3999833 Arabidopsis thaliana
AT5G12330 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3989834-3999833 Arabidopsis thaliana
AT5G12330 10.0kb downstream 10.0kb downstream 12459 true Chr5: 3977375-3989833 Arabidopsis thaliana
AT5G12330 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3977375-3987374 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376722 5261 Brassicaceae View MSA
123839108 5264 Brassicales-Malvales View MSA
124351134 5266 SBM View MSA
124248636 5268 Malvidae View MSA
124069167 5270 Rosid View MSA
123749314 5271 Pentapetalae View MSA
122796752 5272 Eudicot View MSA
122049669 5273 Angiosperm View MSA
121344202 5274 Embryophyte View MSA
123379999 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.04     Low  
cufflinks 1.713        
cufflinks 0.016     Low Low
cufflinks 2.9       High
cufflinks 0.022     Low  
cufflinks 1.451        

0 Strain