Gene : IRX6 A. thaliana TAIR10
Primary Identifier:  ? AT5G15630 Defline:  (1 of 1) PTHR31673//PTHR31673:SF2 - FAMILY NOT NAMED // COBRA-LIKE PROTEIN 4
Genomic Order:  1460 Name:  ? AT5G15630
Secondary Identifier:  ? PAC:19671550
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G15630 0.5kb upstream 0.5kb upstream 2589 true Chr5: 5084204-5086792 Arabidopsis thaliana
AT5G15630 0.5kb upstream 0.5kb upstream 500 false Chr5: 5084204-5084703 Arabidopsis thaliana
AT5G15630 0.5kb downstream 0.5kb downstream 2589 true Chr5: 5084704-5087292 Arabidopsis thaliana
AT5G15630 0.5kb downstream 0.5kb downstream 500 false Chr5: 5086793-5087292 Arabidopsis thaliana
AT5G15630 1.0kb upstream 1.0kb upstream 3089 true Chr5: 5083704-5086792 Arabidopsis thaliana
AT5G15630 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5083704-5084703 Arabidopsis thaliana
AT5G15630 1.0kb downstream 1.0kb downstream 3089 true Chr5: 5084704-5087792 Arabidopsis thaliana
AT5G15630 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5086793-5087792 Arabidopsis thaliana
AT5G15630 2.0kb upstream 2.0kb upstream 4089 true Chr5: 5082704-5086792 Arabidopsis thaliana
AT5G15630 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5082704-5084703 Arabidopsis thaliana
AT5G15630 2.0kb downstream 2.0kb downstream 4089 true Chr5: 5084704-5088792 Arabidopsis thaliana
AT5G15630 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5086793-5088792 Arabidopsis thaliana
AT5G15630 5.0kb upstream 5.0kb upstream 7089 true Chr5: 5079704-5086792 Arabidopsis thaliana
AT5G15630 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5079704-5084703 Arabidopsis thaliana
AT5G15630 5.0kb downstream 5.0kb downstream 7089 true Chr5: 5084704-5091792 Arabidopsis thaliana
AT5G15630 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5086793-5091792 Arabidopsis thaliana
AT5G15630 10.0kb upstream 10.0kb upstream 12089 true Chr5: 5074704-5086792 Arabidopsis thaliana
AT5G15630 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5074704-5084703 Arabidopsis thaliana
AT5G15630 10.0kb downstream 10.0kb downstream 12089 true Chr5: 5084704-5096792 Arabidopsis thaliana
AT5G15630 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5086793-5096792 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369543 5261 Brassicaceae View MSA
123833441 5264 Brassicales-Malvales View MSA
124348545 5266 SBM View MSA
124248758 5268 Malvidae View MSA
124068379 5270 Rosid View MSA
123742644 5271 Pentapetalae View MSA
122793742 5272 Eudicot View MSA
122043541 5273 Angiosperm View MSA
121349086 5274 Embryophyte View MSA
123381159 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.066        
cufflinks 5.404        
cufflinks 0.951        
cufflinks 8.084        
cufflinks 0.738       Low
cufflinks 11.381       High

0 Strain