Gene : CLPB3 A. thaliana TAIR10
Primary Identifier:  ? AT5G15450 Defline:  (1 of 1) PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC
Genomic Order:  1442 Name:  ? AT5G15450
Secondary Identifier:  ? PAC:19669555
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G15450 0.5kb upstream 0.5kb upstream 4636 true Chr5: 5014212-5018847 Arabidopsis thaliana
AT5G15450 0.5kb upstream 0.5kb upstream 500 false Chr5: 5018348-5018847 Arabidopsis thaliana
AT5G15450 0.5kb downstream 0.5kb downstream 4636 true Chr5: 5013712-5018347 Arabidopsis thaliana
AT5G15450 0.5kb downstream 0.5kb downstream 500 false Chr5: 5013712-5014211 Arabidopsis thaliana
AT5G15450 1.0kb upstream 1.0kb upstream 5136 true Chr5: 5014212-5019347 Arabidopsis thaliana
AT5G15450 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5018348-5019347 Arabidopsis thaliana
AT5G15450 1.0kb downstream 1.0kb downstream 5136 true Chr5: 5013212-5018347 Arabidopsis thaliana
AT5G15450 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5013212-5014211 Arabidopsis thaliana
AT5G15450 2.0kb upstream 2.0kb upstream 6136 true Chr5: 5014212-5020347 Arabidopsis thaliana
AT5G15450 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5018348-5020347 Arabidopsis thaliana
AT5G15450 2.0kb downstream 2.0kb downstream 6136 true Chr5: 5012212-5018347 Arabidopsis thaliana
AT5G15450 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5012212-5014211 Arabidopsis thaliana
AT5G15450 5.0kb upstream 5.0kb upstream 9136 true Chr5: 5014212-5023347 Arabidopsis thaliana
AT5G15450 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5018348-5023347 Arabidopsis thaliana
AT5G15450 5.0kb downstream 5.0kb downstream 9136 true Chr5: 5009212-5018347 Arabidopsis thaliana
AT5G15450 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5009212-5014211 Arabidopsis thaliana
AT5G15450 10.0kb upstream 10.0kb upstream 14136 true Chr5: 5014212-5028347 Arabidopsis thaliana
AT5G15450 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5018348-5028347 Arabidopsis thaliana
AT5G15450 10.0kb downstream 10.0kb downstream 14136 true Chr5: 5004212-5018347 Arabidopsis thaliana
AT5G15450 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5004212-5014211 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377841 5261 Brassicaceae View MSA
123831074 5264 Brassicales-Malvales View MSA
124337895 5266 SBM View MSA
124241222 5268 Malvidae View MSA
124062575 5270 Rosid View MSA
123743206 5271 Pentapetalae View MSA
122792663 5272 Eudicot View MSA
122044164 5273 Angiosperm View MSA
121345857 5274 Embryophyte View MSA
123426722 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.853        
cufflinks 6.134       Low
cufflinks 32.038     High  
cufflinks 7.704        
cufflinks 37.316     High High
cufflinks 6.418        

0 Strain