Gene : CNGC18 A. thaliana TAIR10
Primary Identifier:  ? AT5G14870 Defline:  (1 of 2) PTHR10217//PTHR10217:SF479 - VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL // CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED
Genomic Order:  1381 Name:  ? AT5G14870
Secondary Identifier:  ? PAC:19669149
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G14870 0.5kb upstream 0.5kb upstream 3307 true Chr5: 4808091-4811397 Arabidopsis thaliana
AT5G14870 0.5kb upstream 0.5kb upstream 500 false Chr5: 4810898-4811397 Arabidopsis thaliana
AT5G14870 0.5kb downstream 0.5kb downstream 3307 true Chr5: 4807591-4810897 Arabidopsis thaliana
AT5G14870 0.5kb downstream 0.5kb downstream 500 false Chr5: 4807591-4808090 Arabidopsis thaliana
AT5G14870 1.0kb upstream 1.0kb upstream 3807 true Chr5: 4808091-4811897 Arabidopsis thaliana
AT5G14870 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4810898-4811897 Arabidopsis thaliana
AT5G14870 1.0kb downstream 1.0kb downstream 3807 true Chr5: 4807091-4810897 Arabidopsis thaliana
AT5G14870 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4807091-4808090 Arabidopsis thaliana
AT5G14870 2.0kb upstream 2.0kb upstream 4807 true Chr5: 4808091-4812897 Arabidopsis thaliana
AT5G14870 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4810898-4812897 Arabidopsis thaliana
AT5G14870 2.0kb downstream 2.0kb downstream 4807 true Chr5: 4806091-4810897 Arabidopsis thaliana
AT5G14870 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4806091-4808090 Arabidopsis thaliana
AT5G14870 5.0kb upstream 5.0kb upstream 7807 true Chr5: 4808091-4815897 Arabidopsis thaliana
AT5G14870 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4810898-4815897 Arabidopsis thaliana
AT5G14870 5.0kb downstream 5.0kb downstream 7807 true Chr5: 4803091-4810897 Arabidopsis thaliana
AT5G14870 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4803091-4808090 Arabidopsis thaliana
AT5G14870 10.0kb upstream 10.0kb upstream 12807 true Chr5: 4808091-4820897 Arabidopsis thaliana
AT5G14870 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4810898-4820897 Arabidopsis thaliana
AT5G14870 10.0kb downstream 10.0kb downstream 12807 true Chr5: 4798091-4810897 Arabidopsis thaliana
AT5G14870 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4798091-4808090 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041490 5273 Angiosperm View MSA
122367746 5261 Brassicaceae View MSA
123828768 5264 Brassicales-Malvales View MSA
124341644 5266 SBM View MSA
124252266 5268 Malvidae View MSA
124071726 5270 Rosid View MSA
123747107 5271 Pentapetalae View MSA
122792156 5272 Eudicot View MSA
121351754 5274 Embryophyte View MSA
123428762 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.117     Low  
cufflinks 0.271     Low High
cufflinks 0.124     Low  
cufflinks 0.225     Low  
cufflinks 0.123     Low  
cufflinks 0.211     Low  

0 Strain