Gene : AT5G16940 A. thaliana TAIR10
Defline:  (1 of 1) PTHR28620//PTHR28620:SF1 - FAMILY NOT NAMED // PROTEIN F25B4.8, ISOFORM A Genomic Order:  1600
Name:  ? AT5G16940 Secondary Identifier:  ? PAC:19668770
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16940 0.5kb upstream 0.5kb upstream 1356 true Chr5: 5571550-5572905 Arabidopsis thaliana
AT5G16940 0.5kb upstream 0.5kb upstream 500 false Chr5: 5572406-5572905 Arabidopsis thaliana
AT5G16940 0.5kb downstream 0.5kb downstream 1356 true Chr5: 5571050-5572405 Arabidopsis thaliana
AT5G16940 0.5kb downstream 0.5kb downstream 500 false Chr5: 5571050-5571549 Arabidopsis thaliana
AT5G16940 1.0kb upstream 1.0kb upstream 1856 true Chr5: 5571550-5573405 Arabidopsis thaliana
AT5G16940 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5572406-5573405 Arabidopsis thaliana
AT5G16940 1.0kb downstream 1.0kb downstream 1856 true Chr5: 5570550-5572405 Arabidopsis thaliana
AT5G16940 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5570550-5571549 Arabidopsis thaliana
AT5G16940 2.0kb upstream 2.0kb upstream 2856 true Chr5: 5571550-5574405 Arabidopsis thaliana
AT5G16940 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5572406-5574405 Arabidopsis thaliana
AT5G16940 2.0kb downstream 2.0kb downstream 2856 true Chr5: 5569550-5572405 Arabidopsis thaliana
AT5G16940 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5569550-5571549 Arabidopsis thaliana
AT5G16940 5.0kb upstream 5.0kb upstream 5856 true Chr5: 5571550-5577405 Arabidopsis thaliana
AT5G16940 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5572406-5577405 Arabidopsis thaliana
AT5G16940 5.0kb downstream 5.0kb downstream 5856 true Chr5: 5566550-5572405 Arabidopsis thaliana
AT5G16940 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5566550-5571549 Arabidopsis thaliana
AT5G16940 10.0kb upstream 10.0kb upstream 10856 true Chr5: 5571550-5582405 Arabidopsis thaliana
AT5G16940 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5572406-5582405 Arabidopsis thaliana
AT5G16940 10.0kb downstream 10.0kb downstream 10856 true Chr5: 5561550-5572405 Arabidopsis thaliana
AT5G16940 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5561550-5571549 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360911 5261 Brassicaceae View MSA
123829951 5264 Brassicales-Malvales View MSA
124341654 5266 SBM View MSA
124245278 5268 Malvidae View MSA
124068266 5270 Rosid View MSA
123738048 5271 Pentapetalae View MSA
122791227 5272 Eudicot View MSA
122046805 5273 Angiosperm View MSA
121351715 5274 Embryophyte View MSA
123426563 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.472        
cufflinks 3.217        
cufflinks 3.191        
cufflinks 3.032        
cufflinks 3.426        
cufflinks 2.505       Low

0 Strain