Gene : AT5G16880 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13856//PTHR13856:SF93 - VHS DOMAIN CONTAINING PROTEIN FAMILY // SUBFAMILY NOT NAMED Genomic Order:  1594
Name:  ? AT5G16880 Secondary Identifier:  ? PAC:19668400
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16880 0.5kb upstream 0.5kb upstream 3050 true Chr5: 5548414-5551463 Arabidopsis thaliana
AT5G16880 0.5kb upstream 0.5kb upstream 500 false Chr5: 5548414-5548913 Arabidopsis thaliana
AT5G16880 0.5kb downstream 0.5kb downstream 3050 true Chr5: 5548914-5551963 Arabidopsis thaliana
AT5G16880 0.5kb downstream 0.5kb downstream 500 false Chr5: 5551464-5551963 Arabidopsis thaliana
AT5G16880 1.0kb upstream 1.0kb upstream 3550 true Chr5: 5547914-5551463 Arabidopsis thaliana
AT5G16880 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5547914-5548913 Arabidopsis thaliana
AT5G16880 1.0kb downstream 1.0kb downstream 3550 true Chr5: 5548914-5552463 Arabidopsis thaliana
AT5G16880 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5551464-5552463 Arabidopsis thaliana
AT5G16880 2.0kb upstream 2.0kb upstream 4550 true Chr5: 5546914-5551463 Arabidopsis thaliana
AT5G16880 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5546914-5548913 Arabidopsis thaliana
AT5G16880 2.0kb downstream 2.0kb downstream 4550 true Chr5: 5548914-5553463 Arabidopsis thaliana
AT5G16880 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5551464-5553463 Arabidopsis thaliana
AT5G16880 5.0kb upstream 5.0kb upstream 7550 true Chr5: 5543914-5551463 Arabidopsis thaliana
AT5G16880 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5543914-5548913 Arabidopsis thaliana
AT5G16880 5.0kb downstream 5.0kb downstream 7550 true Chr5: 5548914-5556463 Arabidopsis thaliana
AT5G16880 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5551464-5556463 Arabidopsis thaliana
AT5G16880 10.0kb upstream 10.0kb upstream 12550 true Chr5: 5538914-5551463 Arabidopsis thaliana
AT5G16880 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5538914-5548913 Arabidopsis thaliana
AT5G16880 10.0kb downstream 10.0kb downstream 12550 true Chr5: 5548914-5561463 Arabidopsis thaliana
AT5G16880 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5551464-5561463 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360210 5261 Brassicaceae View MSA
123833666 5264 Brassicales-Malvales View MSA
124340636 5266 SBM View MSA
124239478 5268 Malvidae View MSA
124062688 5270 Rosid View MSA
123746960 5271 Pentapetalae View MSA
122785601 5272 Eudicot View MSA
122046025 5273 Angiosperm View MSA
121345678 5274 Embryophyte View MSA
123380253 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.907        
cufflinks 17.838        
cufflinks 12.215       Low
cufflinks 18.629        
cufflinks 14.448        
cufflinks 15.356        

0 Strain