Gene : DOT2 A. thaliana TAIR10
Primary Identifier:  ? AT5G16780 Defline:  (1 of 2) K11984 - U4/U6.U5 tri-snRNP-associated protein 1 (SART1, HAF, SNU66)
Genomic Order:  1584 Name:  ? AT5G16780
Secondary Identifier:  ? PAC:19670576
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16780 0.5kb upstream 0.5kb upstream 5269 true Chr5: 5517490-5522758 Arabidopsis thaliana
AT5G16780 0.5kb upstream 0.5kb upstream 500 false Chr5: 5522259-5522758 Arabidopsis thaliana
AT5G16780 0.5kb downstream 0.5kb downstream 5269 true Chr5: 5516990-5522258 Arabidopsis thaliana
AT5G16780 0.5kb downstream 0.5kb downstream 500 false Chr5: 5516990-5517489 Arabidopsis thaliana
AT5G16780 1.0kb upstream 1.0kb upstream 5769 true Chr5: 5517490-5523258 Arabidopsis thaliana
AT5G16780 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5522259-5523258 Arabidopsis thaliana
AT5G16780 1.0kb downstream 1.0kb downstream 5769 true Chr5: 5516490-5522258 Arabidopsis thaliana
AT5G16780 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5516490-5517489 Arabidopsis thaliana
AT5G16780 2.0kb upstream 2.0kb upstream 6769 true Chr5: 5517490-5524258 Arabidopsis thaliana
AT5G16780 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5522259-5524258 Arabidopsis thaliana
AT5G16780 2.0kb downstream 2.0kb downstream 6769 true Chr5: 5515490-5522258 Arabidopsis thaliana
AT5G16780 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5515490-5517489 Arabidopsis thaliana
AT5G16780 5.0kb upstream 5.0kb upstream 9769 true Chr5: 5517490-5527258 Arabidopsis thaliana
AT5G16780 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5522259-5527258 Arabidopsis thaliana
AT5G16780 5.0kb downstream 5.0kb downstream 9769 true Chr5: 5512490-5522258 Arabidopsis thaliana
AT5G16780 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5512490-5517489 Arabidopsis thaliana
AT5G16780 10.0kb upstream 10.0kb upstream 14769 true Chr5: 5517490-5532258 Arabidopsis thaliana
AT5G16780 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5522259-5532258 Arabidopsis thaliana
AT5G16780 10.0kb downstream 10.0kb downstream 14769 true Chr5: 5507490-5522258 Arabidopsis thaliana
AT5G16780 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5507490-5517489 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367136 5261 Brassicaceae View MSA
123834168 5264 Brassicales-Malvales View MSA
124342005 5266 SBM View MSA
124238371 5268 Malvidae View MSA
124062674 5270 Rosid View MSA
123746922 5271 Pentapetalae View MSA
122786640 5272 Eudicot View MSA
122041665 5273 Angiosperm View MSA
121345433 5274 Embryophyte View MSA
123424851 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.166        
cufflinks 17.906        
cufflinks 12.322       Low
cufflinks 18.876       High
cufflinks 13.448        
cufflinks 17.557        

0 Strain