Gene : TIC40 A. thaliana TAIR10
Primary Identifier:  ? AT5G16620 Defline:  (1 of 1) PTHR22904:SF373 - PROTEIN TIC 40, CHLOROPLASTIC
Genomic Order:  1568 Name:  ? AT5G16620
Secondary Identifier:  ? PAC:19671753
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16620 0.5kb upstream 0.5kb upstream 4340 true Chr5: 5450196-5454535 Arabidopsis thaliana
AT5G16620 0.5kb upstream 0.5kb upstream 500 false Chr5: 5450196-5450695 Arabidopsis thaliana
AT5G16620 0.5kb downstream 0.5kb downstream 4340 true Chr5: 5450696-5455035 Arabidopsis thaliana
AT5G16620 0.5kb downstream 0.5kb downstream 500 false Chr5: 5454536-5455035 Arabidopsis thaliana
AT5G16620 1.0kb upstream 1.0kb upstream 4840 true Chr5: 5449696-5454535 Arabidopsis thaliana
AT5G16620 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5449696-5450695 Arabidopsis thaliana
AT5G16620 1.0kb downstream 1.0kb downstream 4840 true Chr5: 5450696-5455535 Arabidopsis thaliana
AT5G16620 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5454536-5455535 Arabidopsis thaliana
AT5G16620 2.0kb upstream 2.0kb upstream 5840 true Chr5: 5448696-5454535 Arabidopsis thaliana
AT5G16620 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5448696-5450695 Arabidopsis thaliana
AT5G16620 2.0kb downstream 2.0kb downstream 5840 true Chr5: 5450696-5456535 Arabidopsis thaliana
AT5G16620 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5454536-5456535 Arabidopsis thaliana
AT5G16620 5.0kb upstream 5.0kb upstream 8840 true Chr5: 5445696-5454535 Arabidopsis thaliana
AT5G16620 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5445696-5450695 Arabidopsis thaliana
AT5G16620 5.0kb downstream 5.0kb downstream 8840 true Chr5: 5450696-5459535 Arabidopsis thaliana
AT5G16620 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5454536-5459535 Arabidopsis thaliana
AT5G16620 10.0kb upstream 10.0kb upstream 13840 true Chr5: 5440696-5454535 Arabidopsis thaliana
AT5G16620 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5440696-5450695 Arabidopsis thaliana
AT5G16620 10.0kb downstream 10.0kb downstream 13840 true Chr5: 5450696-5464535 Arabidopsis thaliana
AT5G16620 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5454536-5464535 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375143 5261 Brassicaceae View MSA
123838623 5264 Brassicales-Malvales View MSA
124339641 5266 SBM View MSA
124250685 5268 Malvidae View MSA
124060602 5270 Rosid View MSA
123738700 5271 Pentapetalae View MSA
122785851 5272 Eudicot View MSA
122043574 5273 Angiosperm View MSA
121344558 5274 Embryophyte View MSA
123424576 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.199       High
cufflinks 10.349        
cufflinks 25.861        
cufflinks 10.751        
cufflinks 21.634        
cufflinks 9.731       Low

0 Strain