Gene : AT5G16680 A. thaliana TAIR10
Defline:  RING/FYVE/PHD zinc finger superfamily protein Genomic Order:  1573
Name:  ? AT5G16680 Secondary Identifier:  ? PAC:19668125
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16680 0.5kb upstream 0.5kb upstream 6634 true Chr5: 5467373-5474006 Arabidopsis thaliana
AT5G16680 0.5kb upstream 0.5kb upstream 500 false Chr5: 5473507-5474006 Arabidopsis thaliana
AT5G16680 0.5kb downstream 0.5kb downstream 6634 true Chr5: 5466873-5473506 Arabidopsis thaliana
AT5G16680 0.5kb downstream 0.5kb downstream 500 false Chr5: 5466873-5467372 Arabidopsis thaliana
AT5G16680 1.0kb upstream 1.0kb upstream 7134 true Chr5: 5467373-5474506 Arabidopsis thaliana
AT5G16680 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5473507-5474506 Arabidopsis thaliana
AT5G16680 1.0kb downstream 1.0kb downstream 7134 true Chr5: 5466373-5473506 Arabidopsis thaliana
AT5G16680 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5466373-5467372 Arabidopsis thaliana
AT5G16680 2.0kb upstream 2.0kb upstream 8134 true Chr5: 5467373-5475506 Arabidopsis thaliana
AT5G16680 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5473507-5475506 Arabidopsis thaliana
AT5G16680 2.0kb downstream 2.0kb downstream 8134 true Chr5: 5465373-5473506 Arabidopsis thaliana
AT5G16680 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5465373-5467372 Arabidopsis thaliana
AT5G16680 5.0kb upstream 5.0kb upstream 11134 true Chr5: 5467373-5478506 Arabidopsis thaliana
AT5G16680 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5473507-5478506 Arabidopsis thaliana
AT5G16680 5.0kb downstream 5.0kb downstream 11134 true Chr5: 5462373-5473506 Arabidopsis thaliana
AT5G16680 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5462373-5467372 Arabidopsis thaliana
AT5G16680 10.0kb upstream 10.0kb upstream 16134 true Chr5: 5467373-5483506 Arabidopsis thaliana
AT5G16680 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5473507-5483506 Arabidopsis thaliana
AT5G16680 10.0kb downstream 10.0kb downstream 16134 true Chr5: 5457373-5473506 Arabidopsis thaliana
AT5G16680 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5457373-5467372 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373449 5261 Brassicaceae View MSA
123835666 5264 Brassicales-Malvales View MSA
124349721 5266 SBM View MSA
124250039 5268 Malvidae View MSA
124073153 5270 Rosid View MSA
123746144 5271 Pentapetalae View MSA
122794175 5272 Eudicot View MSA
122049832 5273 Angiosperm View MSA
121311609 5274 Embryophyte View MSA
123348884 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.034        
cufflinks 13.983        
cufflinks 10.596       Low
cufflinks 14.791       High
cufflinks 12.409        
cufflinks 12.799        

0 Strain