Gene : KAN A. thaliana TAIR10
Primary Identifier:  ? AT5G16560 Defline:  (1 of 2) PTHR31496:SF7 - TRANSCRIPTION REPRESSOR KAN1-RELATED
Genomic Order:  1561 Name:  ? AT5G16560
Secondary Identifier:  ? PAC:19672649
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16560 0.5kb upstream 0.5kb upstream 5062 true Chr5: 5406863-5411924 Arabidopsis thaliana
AT5G16560 0.5kb upstream 0.5kb upstream 500 false Chr5: 5411425-5411924 Arabidopsis thaliana
AT5G16560 0.5kb downstream 0.5kb downstream 5062 true Chr5: 5406363-5411424 Arabidopsis thaliana
AT5G16560 0.5kb downstream 0.5kb downstream 500 false Chr5: 5406363-5406862 Arabidopsis thaliana
AT5G16560 1.0kb upstream 1.0kb upstream 5562 true Chr5: 5406863-5412424 Arabidopsis thaliana
AT5G16560 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5411425-5412424 Arabidopsis thaliana
AT5G16560 1.0kb downstream 1.0kb downstream 5562 true Chr5: 5405863-5411424 Arabidopsis thaliana
AT5G16560 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5405863-5406862 Arabidopsis thaliana
AT5G16560 2.0kb upstream 2.0kb upstream 6562 true Chr5: 5406863-5413424 Arabidopsis thaliana
AT5G16560 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5411425-5413424 Arabidopsis thaliana
AT5G16560 2.0kb downstream 2.0kb downstream 6562 true Chr5: 5404863-5411424 Arabidopsis thaliana
AT5G16560 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5404863-5406862 Arabidopsis thaliana
AT5G16560 5.0kb upstream 5.0kb upstream 9562 true Chr5: 5406863-5416424 Arabidopsis thaliana
AT5G16560 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5411425-5416424 Arabidopsis thaliana
AT5G16560 5.0kb downstream 5.0kb downstream 9562 true Chr5: 5401863-5411424 Arabidopsis thaliana
AT5G16560 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5401863-5406862 Arabidopsis thaliana
AT5G16560 10.0kb upstream 10.0kb upstream 14562 true Chr5: 5406863-5421424 Arabidopsis thaliana
AT5G16560 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5411425-5421424 Arabidopsis thaliana
AT5G16560 10.0kb downstream 10.0kb downstream 14562 true Chr5: 5396863-5411424 Arabidopsis thaliana
AT5G16560 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5396863-5406862 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362504 5261 Brassicaceae View MSA
123836845 5264 Brassicales-Malvales View MSA
124322214 5266 SBM View MSA
124254020 5268 Malvidae View MSA
124062030 5270 Rosid View MSA
123747856 5271 Pentapetalae View MSA
122786370 5272 Eudicot View MSA
122051060 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121349698 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.846       High
cufflinks 2.043        
cufflinks 3.13        
cufflinks 3.129        
cufflinks 3.344        
cufflinks 1.903       Low

0 Strain