Gene : TRXF2 A. thaliana TAIR10
Primary Identifier:  ? AT5G16400 Defline:  (1 of 2) PTHR10438//PTHR10438:SF258 - THIOREDOXIN // THIOREDOXIN F1, CHLOROPLASTIC-RELATED
Genomic Order:  1543 Name:  ? AT5G16400
Secondary Identifier:  ? PAC:19668530
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16400 0.5kb upstream 0.5kb upstream 2174 true Chr5: 5363661-5365834 Arabidopsis thaliana
AT5G16400 0.5kb upstream 0.5kb upstream 500 false Chr5: 5365335-5365834 Arabidopsis thaliana
AT5G16400 0.5kb downstream 0.5kb downstream 2174 true Chr5: 5363161-5365334 Arabidopsis thaliana
AT5G16400 0.5kb downstream 0.5kb downstream 500 false Chr5: 5363161-5363660 Arabidopsis thaliana
AT5G16400 1.0kb upstream 1.0kb upstream 2674 true Chr5: 5363661-5366334 Arabidopsis thaliana
AT5G16400 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5365335-5366334 Arabidopsis thaliana
AT5G16400 1.0kb downstream 1.0kb downstream 2674 true Chr5: 5362661-5365334 Arabidopsis thaliana
AT5G16400 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5362661-5363660 Arabidopsis thaliana
AT5G16400 2.0kb upstream 2.0kb upstream 3674 true Chr5: 5363661-5367334 Arabidopsis thaliana
AT5G16400 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5365335-5367334 Arabidopsis thaliana
AT5G16400 2.0kb downstream 2.0kb downstream 3674 true Chr5: 5361661-5365334 Arabidopsis thaliana
AT5G16400 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5361661-5363660 Arabidopsis thaliana
AT5G16400 5.0kb upstream 5.0kb upstream 6674 true Chr5: 5363661-5370334 Arabidopsis thaliana
AT5G16400 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5365335-5370334 Arabidopsis thaliana
AT5G16400 5.0kb downstream 5.0kb downstream 6674 true Chr5: 5358661-5365334 Arabidopsis thaliana
AT5G16400 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5358661-5363660 Arabidopsis thaliana
AT5G16400 10.0kb upstream 10.0kb upstream 11674 true Chr5: 5363661-5375334 Arabidopsis thaliana
AT5G16400 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5365335-5375334 Arabidopsis thaliana
AT5G16400 10.0kb downstream 10.0kb downstream 11674 true Chr5: 5353661-5365334 Arabidopsis thaliana
AT5G16400 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5353661-5363660 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360949 5261 Brassicaceae View MSA
123836898 5264 Brassicales-Malvales View MSA
124348522 5266 SBM View MSA
124243481 5268 Malvidae View MSA
124067919 5270 Rosid View MSA
123743661 5271 Pentapetalae View MSA
122790409 5272 Eudicot View MSA
122043508 5273 Angiosperm View MSA
121348014 5274 Embryophyte View MSA
123427200 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.415        
cufflinks 2.26        
cufflinks 30.535     High  
cufflinks 2.204        
cufflinks 36.339     High High
cufflinks 2.156        

0 Strain